Non-Coding RNA Search

Ss1.1-rlin39_j20.5

Sequence:


               
               CACTCACTTGTCTACATATTACCTATGGCTGTTTTAGCATTGCAGCGGCAGAGATGAGTA
GTCATGGCAGACACCATACAGCCTGTCCTGTAAAGCTTAAAATATGTGCTATCTGGCTCT
TTAAGTTTACAGACCCCTGCTCTAAAGCTAAATGAACATTTCTCCCCGAGTAATTTAAAC
TCTGTTGCAATCCCGATAATTCCTGCCAAACAGAATTGTATGTTACTCAGCTCTTTTTTT
CAGAATTTAATCTGCATGTTTGTTAGTTCTCGCATAGTCCACACTTTCTCTAGGACCTTT
GGCAAATCAGAGAGCTCTGTGACTCCTGAGTATTTGACGGTGGGCATACATTTCCCCGGC
CCTGCCGCAAGTGATTGGAAGTAAAGCATGTGGTTTCTGTGGTCTGTGTATCCCATAATA
GTTCTTAATAATTTCATAGACTAGTAGGCTGTCATCAAGTAGAGGCTCCTTCATCTCTAA
GCCCCCAAACCAGACAACGTACCTCAACATCAAGAAGAAAACATTGCTCTATCTGTTTTT
TAAGAGAGGTGTTAATGGCTTCGGCTAAAGTGCAGCAAAGCTAACCACATCCCCTCCCTT
CAGCCACCCCGCCACTTGGCTCCCCTAGATGCACAGAAATAAAGATGTAGTTCTGCTAAT
ACATTTTGACTTTTTCAAGTTATGCTATTTCCTCTATCCTTAGATAAATCACAATAGGTT
ATAATCCAGAAATGAGATTTCATGTTTCCCTTTAGTAGAAATTAGCTTTTTTGGGGGCTA
CCAATTTAAGACACTTGATGTACTCCTTTGTGTCCTTACATTACCATAAACTCAACCTGG
TGAGTTTTGTGGTATTTGACCTCTTAGGTGGAATCACTATTTTCACTTTGACTGATGCTG
TTCTATTCATGAAAATAAGATTCTTCGGTCTACGCATTTGAGCAAGTGCAAATGTTCTAC
AAGTGCAATAGAACAAGTGCACACCTCAGCAAGTGCAATGTAAATTGGACAATGTAGAGA
CAGAGCAGATTGGCGGTTACCGGGGCGGGGGTTGGGGGGCGGGGTGGGGACATAAGTGAA
GGTGGTCAAAAGGTACAAACTTCCTATGAGCTGAGAAGTCCTGGGGCTCTACCCTACAGC
ATGGTGACTAGACTTAACAGTACTGTAATGTGTATTTGAAAGGTGCTAAGAGAGTTGATT
TTTAAAGTTCTCCTCGCACACCCAAACTGTAGCTACGTGAGGTGATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTCACTTGTCTACATATTACCTATGGCTGTTTTAGCATTGCAGCGGCAGAGATGAGTA
GTCATGGCAGACACCATACAGCCTGTCCTGTAAAGCTTAAAATATGTGCTATCTGGCTCT
TTAAGTTTACAGACCCCTGCTCTAAAGCTAAATGAACATTTCTCCCCGAGTAATTTAAAC
TCTGTTGCAATCCCGATAATTCCTGCCAAACAGAATTGTATGTTACTCAGCTCTTTTTTT
CAGAATTTAATCTGCATGTTTGTTAGTTCTCGCATAGTCCACACTTTCTCTAGGACCTTT
GGCAAATCAGAGAGCTCTGTGACTCCTGAGTATTTGACGGTGGGCATACATTTCCCCGGC
CCTGCCGCAAGTGATTGGAAGTAAAGCATGTGGTTTCTGTGGTCTGTGTATCCCATAATA
GTTCTTAATAATTTCATAGACTAGTAGGCTGTCATCAAGTAGAGGCTCCTTCATCTCTAA
GCCCCCAAACCAGACAACGTACCTCAACATCAAGAAGAAAACATTGCTCTATCTGTTTTT
TAAGAGAGGTGTTAATGGCTTCGGCTAAAGTGCAGCAAAGCTAACCACATCCCCTCCCTT
CAGCCACCCCGCCACTTGGCTCCCCTAGATGCACAGAAATAAAGATGTAGTTCTGCTAAT
ACATTTTGACTTTTTCAAGTTATGCTATTTCCTCTATCCTTAGATAAATCACAATAGGTT
ATAATCCAGAAATGAGATTTCATGTTTCCCTTTAGTAGAAATTAGCTTTTTTGGGGGCTA
CCAATTTAAGACACTTGATGTACTCCTTTGTGTCCTTACATTACCATAAACTCAACCTGG
TGAGTTTTGTGGTATTTGACCTCTTAGGTGGAATCACTATTTTCACTTTGACTGATGCTG
TTCTATTCATGAAAATAAGATTCTTCGGTCTACGCATTTGAGCAAGTGCAAATGTTCTAC
AAGTGCAATAGAACAAGTGCACACCTCAGCAAGTGCAATGTAAATTGGACAATGTAGAGA
CAGAGCAGATTGGCGGTTACCGGGGCGGGGGTTGGGGGGCGGGGTGGGGACATAAGTGAA
GGTGGTCAAAAGGTACAAACTTCCTATGAGCTGAGAAGTCCTGGGGCTCTACCCTACAGC
ATGGTGACTAGACTTAACAGTACTGTAATGTGTATTTGAAAGGTGCTAAGAGAGTTGATT
TTTAAAGTTCTCCTCGCACACCCAAACTGTAGCTACGTGAGGTGATGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               32-924, gnl|bosTau2|chr3 (24405627-24406503)
               

               
               32-924, gnl|Hg17|chr1 (114134503-114133274)
               


               
               1009-1215, gnl|bosTau2|chr8 (38987079-38987288)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-924, gnl|bosTau2|chr3 (24405627-24406503)
               

               
               32-924, gnl|Hg17|chr1 (114134503-114133274)
               


               
               1009-1215, gnl|bosTau2|chr8 (38987079-38987288)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               lin (0.291206)
               

               
               jej (0.197844)
               

               
               cje (0.165235)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               jej (0.197844)
               

               
               cje (0.165235)

	32-924, gnl\|bosTau2\|chr3 (24405627-24406503)
	32-924, gnl\|Hg17\|chr1 (114134503-114133274)

	1009-1215, gnl\|bosTau2\|chr8 (38987079-38987288)