Ss1.1-rlin40_c8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAAGGTCGGCAGGCTCGCATCTTTCCTCCAGCCCCAGGGCACCTCGCCGCAGTCCTCC CGACGCGGACCCACGCCTTCCAGGTTTCCTCACGCCGCCCCGCCGGCCAGCGAGCGCCCG GCACCCCACTCCGTCGGGGCGTCCTCCCGCGAGCCCCCGGCCAGCCTCGCGTCCCTCGCG CCCTGGTCCTCGGCGCCCGCGCAGCATGGCGCCCCCCCAGGTCCTCGCGTTCGGGCTCCT GCTCGCCGCGGCGACGGCGGCGGTGGCCGCGGCCCAACAAGGATGTGTGTGTGAAAACTA CAAACTGACCACAAACTGCTCTTTGAATGCGCTTGGTCAGTGCCAGTGTACTTCAATTGG TGCACAAAATTCTGTCATTTGCTCAAAATTGGCTTCCAAATGTTTGGTGATGAAGGCAGA AATGACTGGGTCAAAGGCTGGGAGAAGACTGAAACCAGAGAATGCTATCCAGAACAACGA TGGGCTCTATGATCCTGACTGTGACGAGAATGGGCTCTTCAAAGCCAAGCAGTGTAATGG TACCTCCATGTGCTGGTGTGTGAACACTGCTGGGGTCAGAAGGACCGATAAGGACTCTGA AATATCCTGTTTGGAGCGAGTGAGGACCTACTGGATCATCATTGAACTAAAACACAAAAC AAGAGAAAAACCTTATGATGTCACAAGTTTGCAGAATGCACTCAAGGAGGTAATCACGGA TCGTTACCAACTGGATCCCAAATATATCACAAATATTCTGTATGAGAATGATATTATCAC CATTGATCTGGTACAAAATTCTTCTCAGAAAACTCTGAATGAAGTAGACATAGCTGATGT AGCTTATTATTTTGAAAAAGATGTTAAAGATGAATCCTTGTTCCATTCCAAAAGGATGGA CCTGAGAGTAAATGGGGAACTACTGGATCTGGATCCTGGTCAAACTTCAATTTACTATGT TGATGAAAAACCACCTGAATTTTCAATGCAGGGTCTACAGGCTGGTATTATTGCTGTCAT TGCAGTTGTGGCGATAGCGATTGTTGCTGGCATCATTGTGCTGATTGTTTCCACGAAGAA AAGAAGGGCAAAGTATGAGAAAGCTGAGATAAAGGAGATGGGCGAGATGCATAGGGAACT CAATGCATAACACCGTAATTTGAGGGGTAACTAAAGAAGGGAAATTAGCACAGGCTCAGA TTACTAATGTGTGGAGCAAAGAGAAGATCTTTGAGGACCACTATTGTGTTAGTTAACATC GTATGTTTGTGATAGTTAAACCTGCATTTAAAATAGAAGCAGCTTGAAATTGACTTTACT AATCTTAAAATTTGACCACAGATGTCATAAGTATGCAGATTTGATATTAAACCCAGCATT TGGACTGCATAGTTTGAATTATTTATGCCTAGCATTGAAAGGTATGCATTAAATATGCTT CCACAGTAGAGTCTGAATGACTACTGTCTTACCCATTTGTGATTAAATGTTTGCCTTTCT GTTTACTTTGAGTCTTGTACATATAAACTTTTTTTATGAACTACAAAATAAAACATTTAA AAAATGAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAAGGTCGGCAGGCTCGCATCTTTCCTCCAGCCCCAGGGCACCTCGCCGCAGTCCTCC CGACGCGGACCCACGCCTTCCAGGTTTCCTCACGCCGCCCCGCCGGCCAGCGAGCGCCCG GCACCCCACTCCGTCGGGGCGTCCTCCCGCGAGCCCCCGGCCAGCCTCGCGTCCCTCGCG CCCTGGTCCTCGGCGCCCGCGCAGCATGGCGCCCCCCCAGGTCCTCGCGTTCGGGCTCCT GCTCGCCGCGGCGACGGCGGCGGTGGCCGCGGCCCAACAAGGATGTGTGTGTGAAAACTA CAAACTGACCACAAACTGCTCTTTGAATGCGCTTGGTCAGTGCCAGTGTACTTCAATTGG TGCACAAAATTCTGTCATTTGCTCAAAATTGGCTTCCAAATGTTTGGTGATGAAGGCAGA AATGACTGGGTCAAAGGCTGGGAGAAGACTGAAACCAGAGAATGCTATCCAGAACAACGA TGGGCTCTATGATCCTGACTGTGACGAGAATGGGCTCTTCAAAGCCAAGCAGTGTAATGG TACCTCCATGTGCTGGTGTGTGAACACTGCTGGGGTCAGAAGGACCGATAAGGACTCTGA AATATCCTGTTTGGAGCGAGTGAGGACCTACTGGATCATCATTGAACTAAAACACAAAAC AAGAGAAAAACCTTATGATGTCACAAGTTTGCAGAATGCACTCAAGGAGGTAATCACGGA TCGTTACCAACTGGATCCCAAATATATCACAAATATTCTGTATGAGAATGATATTATCAC CATTGATCTGGTACAAAATTCTTCTCAGAAAACTCTGAATGAAGTAGACATAGCTGATGT AGCTTATTATTTTGAAAAAGATGTTAAAGATGAATCCTTGTTCCATTCCAAAAGGATGGA CCTGAGAGTAAATGGGGAACTACTGGATCTGGATCCTGGTCAAACTTCAATTTACTATGT TGATGAAAAACCACCTGAATTTTCAATGCAGGGTCTACAGGCTGGTATTATTGCTGTCAT TGCAGTTGTGGCGATAGCGATTGTTGCTGGCATCATTGTGCTGATTGTTTCCACGAAGAA AAGAAGGGCAAAGTATGAGAAAGCTGAGATAAAGGAGATGGGCGAGATGCATAGGGAACT CAATGCATAACACCGTAATTTGAGGGGTAACTAAAGAAGGGAAATTAGCACAGGCTCAGA TTACTAATGTGTGGAGCAAAGAGAAGATCTTTGAGGACCACTATTGTGTTAGTTAACATC GTATGTTTGTGATAGTTAAACCTGCATTTAAAATAGAAGCAGCTTGAAATTGACTTTACT AATCTTAAAATTTGACCACAGATGTCATAAGTATGCAGATTTGATATTAAACCCAGCATT TGGACTGCATAGTTTGAATTATTTATGCCTAGCATTGAAAGGTATGCATTAAATATGCTT CCACAGTAGAGTCTGAATGACTACTGTCTTACCCATTTGTGATTAAATGTTTGCCTTTCT GTTTACTTTGAGTCTTGTACATATAAACTTTTTTTATGAACTACAAAATAAAACATTTAA AAAATGAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 7-282, gnl|bosTau2|chr11 (19551671-19551395) | |
| 7-282, gnl|Hg17|chr2 (47508116-47508372) | |
| 390-633, gnl|bosTau2|chr11 (19548746-19548503) | |
| 390-633, gnl|Hg17|chr2 (47512598-47512841) | |
| 390-633, gnl|Mm7|chr17 (85942730-85942973) | |
| 856-1063, gnl|bosTau2|chr11 (19544473-19544266) | |
| 856-1063, gnl|canFam2|chr12 (64162988-64162820) | |
| 856-1063, gnl|dasNov1|scaffold_16376 (11580-11748) | |
| 856-1063, gnl|echTel1|scaffold_205529 (3406-3238) | |
| 856-1063, gnl|Hg17|chr2 (47518552-47518759) | |
| 856-1063, gnl|hg17|chr4 (182819017-182819188) | |
| 856-1063, gnl|loxAfr1|scaffold_1819 (132283-132448) | |
| 856-1063, gnl|mm7|chr17 (85948580-85948751) | |
| 856-1063, gnl|Mm7|chr17 (85948574-85948782) | |
| 856-1063, gnl|monDom2|scaffold_1 (7358650-7358818) | |
| 856-1063, gnl|oryCun1|scaffold_112699 (5736-5907) | |
| 856-1063, gnl|panTro1|chr3 (201076920-201077091) | |
| 856-1063, gnl|rheMac2|chr5 (173633016-173633187) | |
| 856-1063, gnl|rn3|chr6 (11186593-11186764) | |
| 1107-1563, gnl|bosTau2|chr11 (19541713-19541257) | |
| 1107-1563, gnl|Hg17|chr2 (47525360-47525809) | |
| 1107-1563, gnl|Mm7|chr17 (85952868-85953346) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-282, gnl|bosTau2|chr11 (19551671-19551395) | |
| 7-282, gnl|Hg17|chr2 (47508116-47508372) | |
| 390-633, gnl|bosTau2|chr11 (19548746-19548503) | |
| 390-633, gnl|Hg17|chr2 (47512598-47512841) | |
| 390-633, gnl|Mm7|chr17 (85942730-85942973) | |
| 856-1063, gnl|bosTau2|chr11 (19544473-19544266) | |
| 856-1063, gnl|canFam2|chr12 (64162988-64162820) | |
| 856-1063, gnl|dasNov1|scaffold_16376 (11580-11748) | |
| 856-1063, gnl|echTel1|scaffold_205529 (3406-3238) | |
| 856-1063, gnl|Hg17|chr2 (47518552-47518759) | |
| 856-1063, gnl|hg17|chr4 (182819017-182819188) | |
| 856-1063, gnl|loxAfr1|scaffold_1819 (132283-132448) | |
| 856-1063, gnl|mm7|chr17 (85948580-85948751) | |
| 856-1063, gnl|Mm7|chr17 (85948574-85948782) | |
| 856-1063, gnl|monDom2|scaffold_1 (7358650-7358818) | |
| 856-1063, gnl|oryCun1|scaffold_112699 (5736-5907) | |
| 856-1063, gnl|panTro1|chr3 (201076920-201077091) | |
| 856-1063, gnl|rheMac2|chr5 (173633016-173633187) | |
| 856-1063, gnl|rn3|chr6 (11186593-11186764) | |
| 1107-1563, gnl|bosTau2|chr11 (19541713-19541257) | |
| 1107-1563, gnl|Hg17|chr2 (47525360-47525809) | |
| 1107-1563, gnl|Mm7|chr17 (85952868-85953346) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| lin (8.73617) | |
| pro (4.60829) | |
| rec (4.15369) | |
| lyg (3.72687) | |
| tra (3.32349) | |
| mgp (2.99885) | |
| mga (2.88369) | |
| sag (2.19258) | |
| kid (1.94603) | |
| sin (1.74948) | |
| mgm (1.2624) | |
| liv (1.17027) | |
| jej (0.791374) | |
| col (0.780031) | |
| pty (0.713572) | |
| thg (0.633955) | |
| cmu (0.55918) | |
| ski (0.440205) | |
| eje (0.395335) | |
| bla (0.373042) | |
| cje (0.330469) | |
| nco (0.323468) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| pgl (0.236967) | |
| pan (0.23596) | |
| tes (0.207814) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nje (0.16592) | |
| pla (0.133672) | |
| ova (0.129132) | |
| sug (0.127291) | |
| cty (0.10408) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (8.73617) | |
| pro (4.60829) | |
| rec (4.15369) | |
| lyg (3.72687) | |
| tra (3.32349) | |
| mgp (2.99885) | |
| mga (2.88369) | |
| sag (2.19258) | |
| kid (1.94603) | |
| sin (1.74948) | |
| mgm (1.2624) | |
| liv (1.17027) | |
| jej (0.791374) | |
| col (0.780031) | |
| pty (0.713572) | |
| thg (0.633955) | |
| cmu (0.55918) | |
| ski (0.440205) | |
| eje (0.395335) | |
| bla (0.373042) | |
| cje (0.330469) | |
| nco (0.323468) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| pgl (0.236967) | |
| pan (0.23596) | |
| tes (0.207814) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nje (0.16592) | |
| pla (0.133672) | |
| ova (0.129132) | |
| sug (0.127291) | |
| cty (0.10408) |