Non-Coding RNA Search

Ss1.1-rlin40_d5.5

Sequence:


               
               ATCTCAGTATGTGCAAGATGCCGTGTATCTGATTAAAGTTCAGGTGAATAAGTCCTTTTA
TTATCAAGAAACATCTGTTATCATCAGCCTCTCCGTGGCATTTTAAAAGCAAGGCTGGGA
TGAAGCCCACCACTTCTAATGAACATCTTTTCTTAATGTCCCCTGCCCTAACCCCAAGAG
CCCCAGACAGACAGAACCCAGAAATCACCCCTAGCTGTCTCTAGCCTGAATCTTAACTCA
ATTTGACAAAGCTTCCTGCCTAAAAAGTGATCAGCATAAACTGCCCATGGTATATCCAGT
TATGTCTCCAGTCACCGAATCGAATCCCTCTGCTTAGAAATGTGATGGAGTCCTTTAGGT
TCACCACCTGTTCCCCCAGCCTCAGAGAGTGGGCATTGCTGGATGGATGGTCACCGTGAA
TGGCTAGAGGCTGCCACTGTCAACGTAGGAAAACCCCAGACACTCAGATCCAAGAAAGAA
CTGGGAGCTGACCGAACAGAATGGACCGTGGCCGTGGAAAAACGTTTACAAGGGCTCTGC
AGTGGCACTAATGTATAATCACTGCCATTTAAGAGGGAAAGTATACATTAACATATATTT
TAATGTGGCGTACTAATATGCAGTGGCTTGTTTTTTTTTTTTTTTAGCCAGAATTTGCAG
TGTGGAGTTTAATCTCTTAAAATCTTCAGGTGGTCTTCTTTTCCATTGTGCATTCGTCCA
TGTACGAATTGAGTTGTTAAATATATTAAAAATAATATTATGTACTTAAGTGCTCAAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCAGTATGTGCAAGATGCCGTGTATCTGATTAAAGTTCAGGTGAATAAGTCCTTTTA
TTATCAAGAAACATCTGTTATCATCAGCCTCTCCGTGGCATTTTAAAAGCAAGGCTGGGA
TGAAGCCCACCACTTCTAATGAACATCTTTTCTTAATGTCCCCTGCCCTAACCCCAAGAG
CCCCAGACAGACAGAACCCAGAAATCACCCCTAGCTGTCTCTAGCCTGAATCTTAACTCA
ATTTGACAAAGCTTCCTGCCTAAAAAGTGATCAGCATAAACTGCCCATGGTATATCCAGT
TATGTCTCCAGTCACCGAATCGAATCCCTCTGCTTAGAAATGTGATGGAGTCCTTTAGGT
TCACCACCTGTTCCCCCAGCCTCAGAGAGTGGGCATTGCTGGATGGATGGTCACCGTGAA
TGGCTAGAGGCTGCCACTGTCAACGTAGGAAAACCCCAGACACTCAGATCCAAGAAAGAA
CTGGGAGCTGACCGAACAGAATGGACCGTGGCCGTGGAAAAACGTTTACAAGGGCTCTGC
AGTGGCACTAATGTATAATCACTGCCATTTAAGAGGGAAAGTATACATTAACATATATTT
TAATGTGGCGTACTAATATGCAGTGGCTTGTTTTTTTTTTTTTTTAGCCAGAATTTGCAG
TGTGGAGTTTAATCTCTTAAAATCTTCAGGTGGTCTTCTTTTCCATTGTGCATTCGTCCA
TGTACGAATTGAGTTGTTAAATATATTAAAAATAATATTATGTACTTAAGTGCTCAAGTG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-777, gnl|bosTau2|chr23 (18949986-18949241)
               

               
               1-777, gnl|Hg17|chr6 (46752959-46753775)
               

               
               1-777, gnl|Mm7|chr17 (41763376-41762600)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-777, gnl|bosTau2|chr23 (18949986-18949241)
               

               
               1-777, gnl|Hg17|chr6 (46752959-46753775)
               

               
               1-777, gnl|Mm7|chr17 (41763376-41762600)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               che (0.272628)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               lin (0.145603)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               lin (0.145603)

	1-777, gnl\|bosTau2\|chr23 (18949986-18949241)
	1-777, gnl\|Hg17\|chr6 (46752959-46753775)
	1-777, gnl\|Mm7\|chr17 (41763376-41762600)

	che (0.272628)
	bla (0.248694)
	aor (0.195274)
	fty (0.17584)
	lin (0.145603)