Non-Coding RNA Search

Ss1.1-rlin40_l13.5

Sequence:


               
               GGAAAGTACAAGGCATCAAAGAAAACCGGATATGACAATGTTTAGTTTTAGTTGAAAATG
CAACATCACTCTACTTAGGAGAGTTGGCATATTTTCAGATACTTAAGCTATCATAAATTT
TAGACCAATGGCTAATAATAGGATAGATTGATTGTTGGTTCCTTATTTATAGAGAGGCAA
AAAGCAGCATGGCATTAACTCACATTCCAGTAATAAATGAAATTTTAAAAAGTGATGTTA
TAGTTTTGACCACCATCATTCTTCTTAACTCTGTGAGGCACCTGTCAGGTTCCCAGGTCT
TAGAATCATAAATGACTGACTTCTTCTATTACTAAATTCTCATGACTTCCATTTTCATTT
GGTATGCTGAGATCGTAAGTATTGATAATTTATATTTATAAACTTAGAGTTCTGTCAGTA
CCCTGTTACCAGTGAACCTGGTGCCAGCATCTTGAAAAGGTGTCATTATAAGTCAAAAGC
ATTTTGAGCATCTGTGTGCATGTAATACAGTTAGCAGACCCTATAGAGATACACAAAAGG
GATTTTGGAACTTGATGATGATATTATTGATCTTTATTATTACAGCAATCCATTACATTT
TATTGCTTTGCAATGACTATATGAGTTCCCTTATTTGAAAATCATGGTAAAAAGAGATAT
TTACCTCTATTGCTCTATCCATGGTTTCTTCAACTCTTCCATTAATACTTAATTTCCTCT
GTTAGAAAGCATTTTCCTGTTAAGTGTCAAAAGCATCAATCACAAGAAATAGAGAAAATG
TATCAGAAACAAGTTGTATTAGTATGTTCTAAACCAAAATGGAACAATTCATTATTATTT
TAATAAATAAAACTTCCAAATGATCTTGCCAAATTATCCCATTATTTAGAGGTAGAAAAT
AAGAAAAGAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGTACAAGGCATCAAAGAAAACCGGATATGACAATGTTTAGTTTTAGTTGAAAATG
CAACATCACTCTACTTAGGAGAGTTGGCATATTTTCAGATACTTAAGCTATCATAAATTT
TAGACCAATGGCTAATAATAGGATAGATTGATTGTTGGTTCCTTATTTATAGAGAGGCAA
AAAGCAGCATGGCATTAACTCACATTCCAGTAATAAATGAAATTTTAAAAAGTGATGTTA
TAGTTTTGACCACCATCATTCTTCTTAACTCTGTGAGGCACCTGTCAGGTTCCCAGGTCT
TAGAATCATAAATGACTGACTTCTTCTATTACTAAATTCTCATGACTTCCATTTTCATTT
GGTATGCTGAGATCGTAAGTATTGATAATTTATATTTATAAACTTAGAGTTCTGTCAGTA
CCCTGTTACCAGTGAACCTGGTGCCAGCATCTTGAAAAGGTGTCATTATAAGTCAAAAGC
ATTTTGAGCATCTGTGTGCATGTAATACAGTTAGCAGACCCTATAGAGATACACAAAAGG
GATTTTGGAACTTGATGATGATATTATTGATCTTTATTATTACAGCAATCCATTACATTT
TATTGCTTTGCAATGACTATATGAGTTCCCTTATTTGAAAATCATGGTAAAAAGAGATAT
TTACCTCTATTGCTCTATCCATGGTTTCTTCAACTCTTCCATTAATACTTAATTTCCTCT
GTTAGAAAGCATTTTCCTGTTAAGTGTCAAAAGCATCAATCACAAGAAATAGAGAAAATG
TATCAGAAACAAGTTGTATTAGTATGTTCTAAACCAAAATGGAACAATTCATTATTATTT
TAATAAATAAAACTTCCAAATGATCTTGCCAAATTATCCCATTATTTAGAGGTAGAAAAT
AAGAAAAGAATG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-911, gnl|bosTau2|chr4 (36655612-36656489)
               

               
               1-911, gnl|Hg17|chr7 (30183085-30183998)
               

               
               1-911, gnl|Mm7|chr6 (54855897-54856904)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-911, gnl|bosTau2|chr4 (36655612-36656489)
               

               
               1-911, gnl|Hg17|chr7 (30183085-30183998)
               

               
               1-911, gnl|Mm7|chr6 (54855897-54856904)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               rec (0.346141)
               

               
               liv (0.292569)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lin (0.145603)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               liv (0.292569)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lin (0.145603)

	1-911, gnl\|bosTau2\|chr4 (36655612-36656489)
	1-911, gnl\|Hg17\|chr7 (30183085-30183998)
	1-911, gnl\|Mm7\|chr6 (54855897-54856904)

	rec (0.346141)
	liv (0.292569)
	sin (0.174948)
	lun (0.150489)
	ski (0.146735)
	lin (0.145603)