Non-Coding RNA Search

Ss1.1-rlin40_l4.5

Sequence:


               
               ATAAATTCCAAAACTCTGCATTTTTAACAATACAACCTAAACAATTGCTTGGAAAACCAA
ACTCAGTTTCACATGTGTATTTGGATATTGTATCAAAGCATTTTTCAAGATCAAAAAAAA
TTCCAGTAACCTATGATAATGGATTTCTCTTCATTCATACAGACAAACCTGTTTACACTC
CACATCAGTCAGTGAAGGTTAGAGTTTATTCACTGAATGATGAATTGAAGCCAGCCAAAA
GAGAAACAGTCTTAACTTTCATAGATCCCCAAGGATCAGAAGTTGAAGTTCTAGAAGAAA
ATGATTATACTGGAATTATCTCTTTTCCTGACTTCAAGATTCCATCTAATCCTAAGTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAATTCCAAAACTCTGCATTTTTAACAATACAACCTAAACAATTGCTTGGAAAACCAA
ACTCAGTTTCACATGTGTATTTGGATATTGTATCAAAGCATTTTTCAAGATCAAAAAAAA
TTCCAGTAACCTATGATAATGGATTTCTCTTCATTCATACAGACAAACCTGTTTACACTC
CACATCAGTCAGTGAAGGTTAGAGTTTATTCACTGAATGATGAATTGAAGCCAGCCAAAA
GAGAAACAGTCTTAACTTTCATAGATCCCCAAGGATCAGAAGTTGAAGTTCTAGAAGAAA
ATGATTATACTGGAATTATCTCTTTTCCTGACTTCAAGATTCCATCTAATCCTAAGTATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|309123|gb|AAA37348.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|309123|gb|AAA37348.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               258-360, - strand, RNAz p=0.691998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               258-360, - strand, RNAz p=0.691998

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               23-192, gnl|bosTau2|chr8 (61233866-61234036)
               

               
               23-192, gnl|Hg17|chr9 (120885006-120884836)
               

               
               23-192, gnl|Mm7|chr2 (35057885-35057715)
               


               
               258-360, gnl|bosTau2|chr8 (61240746-61240849)
               

               
               258-360, gnl|canFam2|chr11 (77042647-77042796)
               

               
               258-360, gnl|dasNov1|scaffold_39703 (4159-4312)
               

               
               258-360, gnl|echTel1|scaffold_206984 (1174-1312)
               

               
               258-360, gnl|galGal2|chr17 (2086910-2086787)
               

               
               258-360, gnl|hg17|chr9 (120876614-120876752)
               

               
               258-360, gnl|Hg17|chr9 (120876733-120876630)
               

               
               258-360, gnl|loxAfr1|scaffold_113840 (4334-4470)
               

               
               258-360, gnl|mm7|chr2 (35052534-35052691)
               

               
               258-360, gnl|Mm7|chr2 (35052672-35052569)
               

               
               258-360, gnl|monDom2|scaffold_38 (13394094-13394246)
               

               
               258-360, gnl|oryCun1|scaffold_197188 (14966-14817)
               

               
               258-360, gnl|panTro1|chr11 (105613822-105613957)
               

               
               258-360, gnl|rheMac2|chr15 (14965794-14965644)
               

               
               258-360, gnl|rn3|chr3 (13981988-13982152)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-192, gnl|bosTau2|chr8 (61233866-61234036)
               

               
               23-192, gnl|Hg17|chr9 (120885006-120884836)
               

               
               23-192, gnl|Mm7|chr2 (35057885-35057715)
               


               
               258-360, gnl|bosTau2|chr8 (61240746-61240849)
               

               
               258-360, gnl|canFam2|chr11 (77042647-77042796)
               

               
               258-360, gnl|dasNov1|scaffold_39703 (4159-4312)
               

               
               258-360, gnl|echTel1|scaffold_206984 (1174-1312)
               

               
               258-360, gnl|galGal2|chr17 (2086910-2086787)
               

               
               258-360, gnl|hg17|chr9 (120876614-120876752)
               

               
               258-360, gnl|Hg17|chr9 (120876733-120876630)
               

               
               258-360, gnl|loxAfr1|scaffold_113840 (4334-4470)
               

               
               258-360, gnl|mm7|chr2 (35052534-35052691)
               

               
               258-360, gnl|Mm7|chr2 (35052672-35052569)
               

               
               258-360, gnl|monDom2|scaffold_38 (13394094-13394246)
               

               
               258-360, gnl|oryCun1|scaffold_197188 (14966-14817)
               

               
               258-360, gnl|panTro1|chr11 (105613822-105613957)
               

               
               258-360, gnl|rheMac2|chr15 (14965794-14965644)
               

               
               258-360, gnl|rn3|chr3 (13981988-13982152)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               rec (0.17307)
               

               
               lin (0.145603)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               lin (0.145603)

	23-192, gnl\|bosTau2\|chr8 (61233866-61234036)
	23-192, gnl\|Hg17\|chr9 (120885006-120884836)
	23-192, gnl\|Mm7\|chr2 (35057885-35057715)

	258-360, gnl\|bosTau2\|chr8 (61240746-61240849)
	258-360, gnl\|canFam2\|chr11 (77042647-77042796)
	258-360, gnl\|dasNov1\|scaffold_39703 (4159-4312)
	258-360, gnl\|echTel1\|scaffold_206984 (1174-1312)
	258-360, gnl\|galGal2\|chr17 (2086910-2086787)
	258-360, gnl\|hg17\|chr9 (120876614-120876752)
	258-360, gnl\|Hg17\|chr9 (120876733-120876630)
	258-360, gnl\|loxAfr1\|scaffold_113840 (4334-4470)
	258-360, gnl\|mm7\|chr2 (35052534-35052691)
	258-360, gnl\|Mm7\|chr2 (35052672-35052569)
	258-360, gnl\|monDom2\|scaffold_38 (13394094-13394246)
	258-360, gnl\|oryCun1\|scaffold_197188 (14966-14817)
	258-360, gnl\|panTro1\|chr11 (105613822-105613957)
	258-360, gnl\|rheMac2\|chr15 (14965794-14965644)
	258-360, gnl\|rn3\|chr3 (13981988-13982152)