Non-Coding RNA Search

Ss1.1-rlnt01c_k4.5

Sequence:


               
               CCACCCCCGGCCCAGACCCGGGCCCAGGCCAGCTGTGCTGCACCCACGGTCCCCAGGATG
GGGTCTCCCGCCCCCAGCAGGGAGGATTTTGCAAACACGAAAGTCCTGTTCCTTTATCCA
CTGAGATCTGGGGGGCCCGTGTCTCTCGTTCTGATCCTGGCTACTTCCCTTAGAGAATAT
AAGCCCCTTTTTTTCTGGCCTTGCTGATGGCGACAGAAGAAAGGGCTTCTTTTTTGCGTG
GTCCCCTGCCGGTGGGCGTGGGTGCCCAGGGGCCCCCGGTGGCCTGGGCCCCCCTTCCTT
GCCCATGGCCAGCTTCCTGCTGATGAACATGCTGTTTGTATTGTTTTAGGAAAACCAGGC
TGTTTTGTGAATAAAACGAATGCATGTTTGTGTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCCCCGGCCCAGACCCGGGCCCAGGCCAGCTGTGCTGCACCCACGGTCCCCAGGATG
GGGTCTCCCGCCCCCAGCAGGGAGGATTTTGCAAACACGAAAGTCCTGTTCCTTTATCCA
CTGAGATCTGGGGGGCCCGTGTCTCTCGTTCTGATCCTGGCTACTTCCCTTAGAGAATAT
AAGCCCCTTTTTTTCTGGCCTTGCTGATGGCGACAGAAGAAAGGGCTTCTTTTTTGCGTG
GTCCCCTGCCGGTGGGCGTGGGTGCCCAGGGGCCCCCGGTGGCCTGGGCCCCCCTTCCTT
GCCCATGGCCAGCTTCCTGCTGATGAACATGCTGTTTGTATTGTTTTAGGAAAACCAGGC
TGTTTTGTGAATAAAACGAATGCATGTTTGTGTCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               145-260, + strand, RNAz p=0.585026

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-260, + strand, RNAz p=0.585026

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               72-396, gnl|bosTau2|chr13 (48078014-48078337)
               

               
               72-396, gnl|Mm7|chr18 (36237481-36237786)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-396, gnl|bosTau2|chr13 (48078014-48078337)
               

               
               72-396, gnl|Mm7|chr18 (36237481-36237786)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nms (0.213858)
               

               
               lnt (0.142308)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               lnt (0.142308)
               

               
               eje (0.0988338)

	72-396, gnl\|bosTau2\|chr13 (48078014-48078337)
	72-396, gnl\|Mm7\|chr18 (36237481-36237786)