Non-Coding RNA Search

Ss1.1-rlnt02c_d1.5

Sequence:


               
               TCCCGATATCAAAACACTGGATCAGATCCGTACTATTGAACGGAATCAAGAAATTCCTCA
TAAAGGAGCATTTTGTGATCTGGTTTGGTCAGATCCTGAAGATGTGGATACTTGGGCAAT
CAGTCCCCGAGGAGCAGGTTGGCTTTTTGGCGCAAAGGTCACAAATGAGTTTGTTCATAT
CAACAACTTAAAACTCATCTGCAGAGCACACCAGCTAGTGCATGAAGGCTATAAATTTAT
GTTTGATGAGAAGCTGGTAACAGTATGGTCTGCTCCTAATTACTGCTATCGTTGTGGCAA
TATTGCTTCGATCATGGTCTTCAAAGATGTAAATACAAGAGAACCAAAGTTATTCCGGGC
AGTTCCAGATTCAGAACGTGTTATTCCTCCCAGAACGACGACGCCGTATTTCCTTTGAGG
CCTTCGCCCATCCTGCTGACCCATTTTTCTGTCCTCTTCTTACCCCAACTTTCGTGTATT
ACCCTCTACAGTATACTTTTTATTGAGCACTTTGCTGCTGAAATGCTGCCTCTTGCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCGATATCAAAACACTGGATCAGATCCGTACTATTGAACGGAATCAAGAAATTCCTCA
TAAAGGAGCATTTTGTGATCTGGTTTGGTCAGATCCTGAAGATGTGGATACTTGGGCAAT
CAGTCCCCGAGGAGCAGGTTGGCTTTTTGGCGCAAAGGTCACAAATGAGTTTGTTCATAT
CAACAACTTAAAACTCATCTGCAGAGCACACCAGCTAGTGCATGAAGGCTATAAATTTAT
GTTTGATGAGAAGCTGGTAACAGTATGGTCTGCTCCTAATTACTGCTATCGTTGTGGCAA
TATTGCTTCGATCATGGTCTTCAAAGATGTAAATACAAGAGAACCAAAGTTATTCCGGGC
AGTTCCAGATTCAGAACGTGTTATTCCTCCCAGAACGACGACGCCGTATTTCCTTTGAGG
CCTTCGCCCATCCTGCTGACCCATTTTTCTGTCCTCTTCTTACCCCAACTTTCGTGTATT
ACCCTCTACAGTATACTTTTTATTGAGCACTTTGCTGCTGAAATGCTGCCTCTTGCCTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61836713|ref|XP_588314.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61836713|ref|XP_588314.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               408-526, - strand, RNAz p=0.687992

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               408-526, - strand, RNAz p=0.687992

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               168-540, gnl|bosTau2|chr11 (77003958-77003585)
               

               
               168-540, gnl|canFam2|chr5 (46097757-46097994)
               

               
               168-540, gnl|danRer3|chr5 (25956096-25956333)
               

               
               168-540, gnl|dasNov1|scaffold_181270 (1070-1307)
               

               
               168-540, gnl|echTel1|scaffold_303568 (6767-6530)
               

               
               168-540, gnl|galGal2|chr17 (864891-865128)
               

               
               168-540, gnl|Hg17|chr9 (124991756-124991384)
               

               
               168-540, gnl|hg17|chrX (108686199-108686416)
               

               
               168-540, gnl|loxAfr1|scaffold_4494 (27995-28232)
               

               
               168-540, gnl|mm7|chr2 (39204903-39204666)
               

               
               168-540, gnl|Mm7|chr2 (39204902-39204539)
               

               
               168-540, gnl|monDom2|scaffold_38 (19331917-19331680)
               

               
               168-540, gnl|oryCun1|scaffold_130988 (4267-4037)
               

               
               168-540, gnl|panTro1|chrX (112381083-112381300)
               

               
               168-540, gnl|rheMac2|chrX (108355755-108355975)
               

               
               168-540, gnl|rn3|chr3 (18863742-18863505)
               

               
               168-540, gnl|tetNig1|chrUn_random (87467874-87468111)
               

               
               168-540, gnl|xenTro1|scaffold_974 (114426-114189)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-540, gnl|bosTau2|chr11 (77003958-77003585)
               

               
               168-540, gnl|canFam2|chr5 (46097757-46097994)
               

               
               168-540, gnl|danRer3|chr5 (25956096-25956333)
               

               
               168-540, gnl|dasNov1|scaffold_181270 (1070-1307)
               

               
               168-540, gnl|echTel1|scaffold_303568 (6767-6530)
               

               
               168-540, gnl|galGal2|chr17 (864891-865128)
               

               
               168-540, gnl|Hg17|chr9 (124991756-124991384)
               

               
               168-540, gnl|hg17|chrX (108686199-108686416)
               

               
               168-540, gnl|loxAfr1|scaffold_4494 (27995-28232)
               

               
               168-540, gnl|mm7|chr2 (39204903-39204666)
               

               
               168-540, gnl|Mm7|chr2 (39204902-39204539)
               

               
               168-540, gnl|monDom2|scaffold_38 (19331917-19331680)
               

               
               168-540, gnl|oryCun1|scaffold_130988 (4267-4037)
               

               
               168-540, gnl|panTro1|chrX (112381083-112381300)
               

               
               168-540, gnl|rheMac2|chrX (108355755-108355975)
               

               
               168-540, gnl|rn3|chr3 (18863742-18863505)
               

               
               168-540, gnl|tetNig1|chrUn_random (87467874-87468111)
               

               
               168-540, gnl|xenTro1|scaffold_974 (114426-114189)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               pla (0.267344)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	168-540, gnl\|bosTau2\|chr11 (77003958-77003585)
	168-540, gnl\|canFam2\|chr5 (46097757-46097994)
	168-540, gnl\|danRer3\|chr5 (25956096-25956333)
	168-540, gnl\|dasNov1\|scaffold_181270 (1070-1307)
	168-540, gnl\|echTel1\|scaffold_303568 (6767-6530)
	168-540, gnl\|galGal2\|chr17 (864891-865128)
	168-540, gnl\|Hg17\|chr9 (124991756-124991384)
	168-540, gnl\|hg17\|chrX (108686199-108686416)
	168-540, gnl\|loxAfr1\|scaffold_4494 (27995-28232)
	168-540, gnl\|mm7\|chr2 (39204903-39204666)
	168-540, gnl\|Mm7\|chr2 (39204902-39204539)
	168-540, gnl\|monDom2\|scaffold_38 (19331917-19331680)
	168-540, gnl\|oryCun1\|scaffold_130988 (4267-4037)
	168-540, gnl\|panTro1\|chrX (112381083-112381300)
	168-540, gnl\|rheMac2\|chrX (108355755-108355975)
	168-540, gnl\|rn3\|chr3 (18863742-18863505)
	168-540, gnl\|tetNig1\|chrUn_random (87467874-87468111)
	168-540, gnl\|xenTro1\|scaffold_974 (114426-114189)

	pla (0.267344)
	lun (0.150489)
	lnt (0.142308)
	bla (0.124347)
	spc (0.113366)