Non-Coding RNA Search

Ss1.1-rlnt04c_g10.5

Sequence:


               
               ATTTAGAAGTGAAACTGGTGCTGTGATTATAGCAATACTTTACTTTTGTTAGTTGTACTC
CACTTTTTCATGCTAGCTTTTTCAATGTTTAGTTTTCCTCTTGTCATGGTCAACTGCTGA
ATTTACTTGAAGGATATAGAATACTGTTTAAACAATACTAAAGTGTGTACAATTAGGTCA
AAGAATTGTGCAATTATTTCCTTTTTAATTTTTACAATTGAGGGTCATAATATTTGGAAA
TGTCAGATCTAACAGAGCATAGTGATACTATTTAATTTAACCAAAGTCTCTAGTGAGTAT
TTCAACTTTGAATGTAAACTAATGAATAAACCTGACCACCAAGGAGATTGTTTGCCCAGA
GTTTCAAAGCACATTGTCTACAAATGGAAATTGAAATAATTTATAAAAATATTGACATTA
CTATGTTTTTTAAAAAGTTCTTAATTTTTTCACTAAAAGGAGGAAACTATTAGTTTTATT
GTTAAATATGGTAGATATTAAATTCCTCTTAGATCACCAGTGATTCCAATTGTCCCAGTT
TGAAATAAGTACCCTGTGAATATGAGATTAATTAGTGACAATCAGAACAAGTTTTAGTAT
CAGATGTTCAAGAGGAAGTTGCTATTGTTGCATTGATTTTAATATTTGTACATAAACACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTAGAAGTGAAACTGGTGCTGTGATTATAGCAATACTTTACTTTTGTTAGTTGTACTC
CACTTTTTCATGCTAGCTTTTTCAATGTTTAGTTTTCCTCTTGTCATGGTCAACTGCTGA
ATTTACTTGAAGGATATAGAATACTGTTTAAACAATACTAAAGTGTGTACAATTAGGTCA
AAGAATTGTGCAATTATTTCCTTTTTAATTTTTACAATTGAGGGTCATAATATTTGGAAA
TGTCAGATCTAACAGAGCATAGTGATACTATTTAATTTAACCAAAGTCTCTAGTGAGTAT
TTCAACTTTGAATGTAAACTAATGAATAAACCTGACCACCAAGGAGATTGTTTGCCCAGA
GTTTCAAAGCACATTGTCTACAAATGGAAATTGAAATAATTTATAAAAATATTGACATTA
CTATGTTTTTTAAAAAGTTCTTAATTTTTTCACTAAAAGGAGGAAACTATTAGTTTTATT
GTTAAATATGGTAGATATTAAATTCCTCTTAGATCACCAGTGATTCCAATTGTCCCAGTT
TGAAATAAGTACCCTGTGAATATGAGATTAATTAGTGACAATCAGAACAAGTTTTAGTAT
CAGATGTTCAAGAGGAAGTTGCTATTGTTGCATTGATTTTAATATTTGTACATAAACACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               499-617, + strand, RNAz p=0.844013

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               499-617, + strand, RNAz p=0.844013

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR749246, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR749246, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr20 (12668125-12668785)
               

               
               1-660, gnl|Hg17|chr5 (56251923-56251268)
               

               
               1-660, gnl|Mm7|chr13 (108874372-108875034)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr20 (12668125-12668785)
               

               
               1-660, gnl|Hg17|chr5 (56251923-56251268)
               

               
               1-660, gnl|Mm7|chr13 (108874372-108875034)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               lin (0.436808)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	1-660, gnl\|bosTau2\|chr20 (12668125-12668785)
	1-660, gnl\|Hg17\|chr5 (56251923-56251268)
	1-660, gnl\|Mm7\|chr13 (108874372-108875034)

	lin (0.436808)
	eye (0.170503)
	fco (0.157208)
	bfe (0.149858)
	lnt (0.142308)
	ret (0.128733)
	jca (0.11396)
	jej (0.0989218)