Ss1.1-rlnt04c_l18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTGCAGGGGTGCTGAAACGACCAGAGGCATTGACAGATGAGAGTCACAGCAGCTGGGCA GCCCCACGTCTCCTGACCACCTCACTTATTCCTAGCCGCAGCTTCCAAACCAGTGCCATT TCAAGAGACATTGACACAGCAGCCAAGTTCATTGGAGCTGGGGCTGCCACAGTAGGAGTG GCTGGCTCTGGGGCTGGAATGGGGACTGTGTTGGGGAGCCTCATCATGGGTTATGCCAGG AACCCTTCTCTGAAGCAACAGCTCTTCTCCTACGCCATTCTGGGCTTGGCCCTCTCGGAG GCCATGGGGCTCTTTTGCCTGATGGTGGCCTTTCTCATCCTCTTCGCCATGTGAAGGAGC CGTGTCCACCTCCCATAGTTCTTTCTCCTGGGTCTCATCTGCCCCGTGTATTCCTTTTCT TGTACCTCCCCAGGCAGGCTGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTGCAGGGGTGCTGAAACGACCAGAGGCATTGACAGATGAGAGTCACAGCAGCTGGGCA GCCCCACGTCTCCTGACCACCTCACTTATTCCTAGCCGCAGCTTCCAAACCAGTGCCATT TCAAGAGACATTGACACAGCAGCCAAGTTCATTGGAGCTGGGGCTGCCACAGTAGGAGTG GCTGGCTCTGGGGCTGGAATGGGGACTGTGTTGGGGAGCCTCATCATGGGTTATGCCAGG AACCCTTCTCTGAAGCAACAGCTCTTCTCCTACGCCATTCTGGGCTTGGCCCTCTCGGAG GCCATGGGGCTCTTTTGCCTGATGGTGGCCTTTCTCATCCTCTTCGCCATGTGAAGGAGC CGTGTCCACCTCCCATAGTTCTTTCTCCTGGGTCTCATCTGCCCCGTGTATTCCTTTTCT TGTACCTCCCCAGGCAGGCTGGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 105-343, + strand, RNAz p=0.787279 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 105-343, + strand, RNAz p=0.787279 |
| Aligned organism(s): 6 entry(ies) | More info |
| Aligned organism(s): 6 entry(ies) | Help | Less info |
| 1-444, gnl|bosTau2|chr17 (12537752-12537310) | |
| 1-444, gnl|Hg17|chr1 (205829888-205829448) | |
| 1-444, gnl|Mm7|chr17 (5761739-5761297) | |
| 105-355, gnl|bosTau2|chr11 (24559149-24559399) | |
| 105-355, gnl|Hg17|chr10 (70862980-70862730) | |
| 105-355, gnl|Mm7|chr11 (100471004-100470754) |
| Aligned organism(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-444, gnl|bosTau2|chr17 (12537752-12537310) | |
| 1-444, gnl|Hg17|chr1 (205829888-205829448) | |
| 1-444, gnl|Mm7|chr17 (5761739-5761297) | |
| 105-355, gnl|bosTau2|chr11 (24559149-24559399) | |
| 105-355, gnl|Hg17|chr10 (70862980-70862730) | |
| 105-355, gnl|Mm7|chr11 (100471004-100470754) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| nco (0.323468) | |
| cga (0.279096) | |
| ece (0.229305) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cov (0.132153) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.323468) | |
| cga (0.279096) | |
| ece (0.229305) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cov (0.132153) |