Non-Coding RNA Search

Ss1.1-rlnt05c_f13.5

Sequence:


               
               GCTCAACTCCCTTTCTGCCTCTGCCTGCCGCCATGGCGCCTGTGAAAAAGCTTGTGGCGA
AGGGGGGCAAAAAAAAGAAGCAGGTTCTCAAGTTCACTCTTGATTGCACGCACCCAGTGG
AAGATGGAATCATGGATGCGGCCAATTTTGAACAGTTTCTTCAGGAAAGAATCAAAGTGA
ATGGGAAAGCTGGAAACCTCGGAGGAGGGGTTGTAACAATCGAGAGAAGCAAAAGCAAGA
TCACTGTAACTTCCGAGGTGCCTTTTTCCAAAAGGTATTTGAAATATCTCACCAAAAAGT
ATTTGAAGAAGAATAACCTACGTGACTGGTTACGTGTCGTTGCTAACAGCAAAGAGAGCT
ATGAATTACGCTACTTCCAGATTAATCAGGATGAAGAGGAGGAGGAAGATGAGGATTGAA
ATTCCTTTATCTGTAACATTTTGTATGAGTTCTTGAATAAAAGTAAGGAATCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAACTCCCTTTCTGCCTCTGCCTGCCGCCATGGCGCCTGTGAAAAAGCTTGTGGCGA
AGGGGGGCAAAAAAAAGAAGCAGGTTCTCAAGTTCACTCTTGATTGCACGCACCCAGTGG
AAGATGGAATCATGGATGCGGCCAATTTTGAACAGTTTCTTCAGGAAAGAATCAAAGTGA
ATGGGAAAGCTGGAAACCTCGGAGGAGGGGTTGTAACAATCGAGAGAAGCAAAAGCAAGA
TCACTGTAACTTCCGAGGTGCCTTTTTCCAAAAGGTATTTGAAATATCTCACCAAAAAGT
ATTTGAAGAAGAATAACCTACGTGACTGGTTACGTGTCGTTGCTAACAGCAAAGAGAGCT
ATGAATTACGCTACTTCCAGATTAATCAGGATGAAGAGGAGGAGGAAGATGAGGATTGAA
ATTCCTTTATCTGTAACATTTTGTATGAGTTCTTGAATAAAAGTAAGGAATCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PDV8_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PDV8_RAT

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               9-483, gnl|bosTau2|chr12 (47864030-47863567)
               

               
               9-483, gnl|Hg17|chr14 (18538486-18538949)
               

               
               9-483, gnl|Mm7|chr11 (14114061-14114530)
               


               
               90-415, gnl|bosTau2|chr10 (30452518-30452196)
               

               
               90-415, gnl|Hg17|chr3 (172068848-172066875)
               

               
               90-415, gnl|Mm7|chr5 (21566536-21566214)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-483, gnl|bosTau2|chr12 (47864030-47863567)
               

               
               9-483, gnl|Hg17|chr14 (18538486-18538949)
               

               
               9-483, gnl|Mm7|chr11 (14114061-14114530)
               


               
               90-415, gnl|bosTau2|chr10 (30452518-30452196)
               

               
               90-415, gnl|Hg17|chr3 (172068848-172066875)
               

               
               90-415, gnl|Mm7|chr5 (21566536-21566214)

Expressed library(ies): 74 entry(ies)

More info

Expressed library(ies): 74 entry(ies)

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               cte (3.22014)
               

               
               csk (2.95567)
               

               
               amn (2.50627)
               

               
               cmu (2.42311)
               

               
               aor (1.95274)
               

               
               med (1.86003)
               

               
               sag (1.82715)
               

               
               sto (1.43859)
               

               
               fty (1.23088)
               

               
               sme (1.22175)
               

               
               rec (1.21149)
               

               
               bfe (1.19886)
               

               
               mcp (1.19454)
               

               
               elu (1.15607)
               

               
               ese (1.13852)
               

               
               spc (1.13366)
               

               
               eye (1.02302)
               

               
               lnt (0.996158)
               

               
               eje (0.988338)
               

               
               mga (0.96123)
               

               
               nlu (0.958405)
               

               
               nca (0.958117)
               

               
               cut (0.849618)
               

               
               nje (0.8296)
               

               
               fce (0.814775)
               

               
               fco (0.78604)
               

               
               ill (0.702371)
               

               
               jca (0.683761)
               

               
               kid (0.648677)
               

               
               nco (0.646935)
               

               
               nms (0.641574)
               

               
               eru (0.60024)
               

               
               ova (0.516529)
               

               
               cki (0.495704)
               

               
               cbe (0.478469)
               

               
               ecc (0.46014)
               

               
               hlv (0.417769)
               

               
               ssp (0.406559)
               

               
               nbm (0.397298)
               

               
               jej (0.395687)
               

               
               nep (0.36785)
               

               
               ton (0.351)
               

               
               sin (0.349895)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               cag (0.302389)
               

               
               ski (0.29347)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 74 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (3.22014)
               

               
               csk (2.95567)
               

               
               amn (2.50627)
               

               
               cmu (2.42311)
               

               
               aor (1.95274)
               

               
               med (1.86003)
               

               
               sag (1.82715)
               

               
               sto (1.43859)
               

               
               fty (1.23088)
               

               
               sme (1.22175)
               

               
               rec (1.21149)
               

               
               bfe (1.19886)
               

               
               mcp (1.19454)
               

               
               elu (1.15607)
               

               
               ese (1.13852)
               

               
               spc (1.13366)
               

               
               eye (1.02302)
               

               
               lnt (0.996158)
               

               
               eje (0.988338)
               

               
               mga (0.96123)
               

               
               nlu (0.958405)
               

               
               nca (0.958117)
               

               
               cut (0.849618)
               

               
               nje (0.8296)
               

               
               fce (0.814775)
               

               
               fco (0.78604)
               

               
               ill (0.702371)
               

               
               jca (0.683761)
               

               
               kid (0.648677)
               

               
               nco (0.646935)
               

               
               nms (0.641574)
               

               
               eru (0.60024)
               

               
               ova (0.516529)
               

               
               cki (0.495704)
               

               
               cbe (0.478469)
               

               
               ecc (0.46014)
               

               
               hlv (0.417769)
               

               
               ssp (0.406559)
               

               
               nbm (0.397298)
               

               
               jej (0.395687)
               

               
               nep (0.36785)
               

               
               ton (0.351)
               

               
               sin (0.349895)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               cag (0.302389)
               

               
               ski (0.29347)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	9-483, gnl\|bosTau2\|chr12 (47864030-47863567)
	9-483, gnl\|Hg17\|chr14 (18538486-18538949)
	9-483, gnl\|Mm7\|chr11 (14114061-14114530)

	90-415, gnl\|bosTau2\|chr10 (30452518-30452196)
	90-415, gnl\|Hg17\|chr3 (172068848-172066875)
	90-415, gnl\|Mm7\|chr5 (21566536-21566214)

	cte (3.22014)
	csk (2.95567)
	amn (2.50627)
	cmu (2.42311)
	aor (1.95274)
	med (1.86003)
	sag (1.82715)
	sto (1.43859)
	fty (1.23088)
	sme (1.22175)
	rec (1.21149)
	bfe (1.19886)
	mcp (1.19454)
	elu (1.15607)
	ese (1.13852)
	spc (1.13366)
	eye (1.02302)
	lnt (0.996158)
	eje (0.988338)
	mga (0.96123)
	nlu (0.958405)
	nca (0.958117)
	cut (0.849618)
	nje (0.8296)
	fce (0.814775)
	fco (0.78604)
	ill (0.702371)
	jca (0.683761)
	kid (0.648677)
	nco (0.646935)
	nms (0.641574)
	eru (0.60024)
	ova (0.516529)
	cki (0.495704)
	cbe (0.478469)
	ecc (0.46014)
	hlv (0.417769)
	ssp (0.406559)
	nbm (0.397298)
	jej (0.395687)
	nep (0.36785)
	ton (0.351)
	sin (0.349895)
	duo (0.345602)
	fhi (0.339155)
	cag (0.302389)
	ski (0.29347)
	sug (0.254582)
	mgp (0.230681)
	ece (0.229305)
	mas (0.210305)
	hea (0.204499)
	fli (0.202881)
	fcc (0.197785)
	gul (0.177588)
	cje (0.165235)
	csp (0.161186)
	cli (0.152812)
	eli (0.151814)
	fat (0.147427)
	pty (0.142714)
	che (0.136314)
	lyg (0.133103)
	nmm (0.132802)
	ute (0.132784)
	cov (0.132153)
	ret (0.128733)
	thg (0.126791)
	eep (0.122564)
	cly (0.120642)
	clu (0.119646)
	pgl (0.118483)
	ebs (0.118301)
	ldo (0.0970026)