Non-Coding RNA Search

Ss1.1-rlnt05c_f15.5

Sequence:


               
               TGCTGACCCAGCCCCACATCTGCAGGCTGCTGTGGGACAGGGCTGGTGCTTTGGCTCTGA
TTTCTGGCCTGGGAGGTGCCTTTGCTCTTGGCTGAGACAGGAGCCCTGAAGAGGCCCGGG
CCCTTGAGCTGCGTGGATGGCCTTGTTTGCTGTGGGCGTCGTGGGGGGCCTGCCTGAGCT
GGCCGTTGTCCACAGCCCCATCTGTCCCAGTGCCTTTGCCCTTCCCCAGGGGCCTGCCAG
CCAGACCTTTCATCTCCTCTCTGCAGCTCCCACTCTGCCTAACCCAGCCTTAAACACAGC
CCTGGCCAGAGGCCTTGCTGGATGGAGTCCACAGCCCCCATCCACCCCCTTGTCTGTTGA
ACCCTGTGCATTCACAGCCCGCCACCTCCCCTGTGAGCTTTCTGGGGGTGACTTTTTTTG
GCTTTGCTGTTGGAGGCCTGGGGCCTCTTAGAATTGCTGCTAATCCTGCTCAGAGCCAGG
AGGAAGACCTGGCAGTTTCCAAAGCACAGCATAGCTGGTCCGGCTTCCGTGGCTCCGTCT
CTGCCGCCTGTGTAAGCTAATTAAAATGGTTTCCCAGGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGACCCAGCCCCACATCTGCAGGCTGCTGTGGGACAGGGCTGGTGCTTTGGCTCTGA
TTTCTGGCCTGGGAGGTGCCTTTGCTCTTGGCTGAGACAGGAGCCCTGAAGAGGCCCGGG
CCCTTGAGCTGCGTGGATGGCCTTGTTTGCTGTGGGCGTCGTGGGGGGCCTGCCTGAGCT
GGCCGTTGTCCACAGCCCCATCTGTCCCAGTGCCTTTGCCCTTCCCCAGGGGCCTGCCAG
CCAGACCTTTCATCTCCTCTCTGCAGCTCCCACTCTGCCTAACCCAGCCTTAAACACAGC
CCTGGCCAGAGGCCTTGCTGGATGGAGTCCACAGCCCCCATCCACCCCCTTGTCTGTTGA
ACCCTGTGCATTCACAGCCCGCCACCTCCCCTGTGAGCTTTCTGGGGGTGACTTTTTTTG
GCTTTGCTGTTGGAGGCCTGGGGCCTCTTAGAATTGCTGCTAATCCTGCTCAGAGCCAGG
AGGAAGACCTGGCAGTTTCCAAAGCACAGCATAGCTGGTCCGGCTTCCGTGGCTCCGTCT
CTGCCGCCTGTGTAAGCTAATTAAAATGGTTTCCCAGGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               200-345, - strand, RNAz p=0.885979
               

               
               379-534, + strand, RNAz p=0.941418

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-345, - strand, RNAz p=0.885979
               

               
               379-534, + strand, RNAz p=0.941418

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_031228, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_031228, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-580, gnl|bosTau2|chr13 (41914678-41915246)
               

               
               1-580, gnl|Hg17|chr20 (359096-359610)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-580, gnl|bosTau2|chr13 (41914678-41915246)
               

               
               1-580, gnl|Hg17|chr20 (359096-359610)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fty (0.351679)
               

               
               lnt (0.284616)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               lnt (0.284616)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	200-345, - strand, RNAz p=0.885979
	379-534, + strand, RNAz p=0.941418

	1-580, gnl\|bosTau2\|chr13 (41914678-41915246)
	1-580, gnl\|Hg17\|chr20 (359096-359610)

	fty (0.351679)
	lnt (0.284616)
	col (0.195008)
	fbs (0.175346)
	csp (0.161186)
	med (0.116252)
	ecc (0.115035)