Non-Coding RNA Search

Ss1.1-rlnt05c_o21.5

Sequence:


               
               CCTTGACATGCGGAAATCCCTGGCCAGGAATCACACCTGGGCCACAGAGGGACAGCGCCA
CATCTGGTAGCTTTTTTAGTTGCTGTGAAAGAAAAATGGTATTGGAAATTCCCATGTTAA
CTTCCATAAACCATTTGACCTGGCCAGTTCTAGAAATCCACACATTTACTACTTTGAAAT
GTGTCCAGTATCACAGATTCCTAAGGGACTTGCACCCATCCAGTGCGCCTTTGTAAATTA
AGGGATGCTTACCAAAAATTCACTATGGAATTTAACAAGTATTTATTTTTCAGAAACCTA
CTTATGGGAAGTTTGCCTATATTTTTGGTAGTAGTTAGAGAGATGATTCTGTCACCTAAT
TTGGATTAACAGTTTTAACTATTGCTATTACCGAACACTGTTTGCTAATACTCTCCATAA
GCTTTGATGTCACCTGTTTGACTTTGAATTTATCTTAAATTCTTTTTTATGAAGAGTGAG
TGTACACTGATTTGGCCCTTTTACACGAAGACATAAAGAAGTAGCAAAAAAGAAAGGACT
TTCTTTAAAGAGTCAGTGCACACTTTAAGTAGATTATGTAGAACATACCATGTTGAAAAA
TTTGTATAGGTAGATACTGGTTTTGAGAAGAATAGAGTGGAGGTGGAACTTACGTCGACG
GGATAGGAATCATTTGTGGTTTATATAGAACATACTTTTAATTGAGAAACAGCAGAGCAT
TTACTTAAAAGTTTCTGGCCGTTCTGATTATTACCACAAGAAGCAGGAGAGACTCCTGGA
ATTCTTTGAATCATAGAATAGAAGTGCTGGAAAGGACTAAGGTGATTTATACAACCCCTT
CATTTTTCAGAAGATAGGTGGCTCAGAGTTTCCAATCAGGCTGTAGAGGTCATGGGAAGC
CCCTTCAGGGTCTGCCAGTCTGCCCTGGGCTTGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTGACATGCGGAAATCCCTGGCCAGGAATCACACCTGGGCCACAGAGGGACAGCGCCA
CATCTGGTAGCTTTTTTAGTTGCTGTGAAAGAAAAATGGTATTGGAAATTCCCATGTTAA
CTTCCATAAACCATTTGACCTGGCCAGTTCTAGAAATCCACACATTTACTACTTTGAAAT
GTGTCCAGTATCACAGATTCCTAAGGGACTTGCACCCATCCAGTGCGCCTTTGTAAATTA
AGGGATGCTTACCAAAAATTCACTATGGAATTTAACAAGTATTTATTTTTCAGAAACCTA
CTTATGGGAAGTTTGCCTATATTTTTGGTAGTAGTTAGAGAGATGATTCTGTCACCTAAT
TTGGATTAACAGTTTTAACTATTGCTATTACCGAACACTGTTTGCTAATACTCTCCATAA
GCTTTGATGTCACCTGTTTGACTTTGAATTTATCTTAAATTCTTTTTTATGAAGAGTGAG
TGTACACTGATTTGGCCCTTTTACACGAAGACATAAAGAAGTAGCAAAAAAGAAAGGACT
TTCTTTAAAGAGTCAGTGCACACTTTAAGTAGATTATGTAGAACATACCATGTTGAAAAA
TTTGTATAGGTAGATACTGGTTTTGAGAAGAATAGAGTGGAGGTGGAACTTACGTCGACG
GGATAGGAATCATTTGTGGTTTATATAGAACATACTTTTAATTGAGAAACAGCAGAGCAT
TTACTTAAAAGTTTCTGGCCGTTCTGATTATTACCACAAGAAGCAGGAGAGACTCCTGGA
ATTCTTTGAATCATAGAATAGAAGTGCTGGAAAGGACTAAGGTGATTTATACAACCCCTT
CATTTTTCAGAAGATAGGTGGCTCAGAGTTTCCAATCAGGCTGTAGAGGTCATGGGAAGC
CCCTTCAGGGTCTGCCAGTCTGCCCTGGGCTTGCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               477-588, + strand, RNAz p=0.743542

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               477-588, + strand, RNAz p=0.743542

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               85-867, gnl|bosTau2|chr7 (43603378-43604192)
               

               
               85-867, gnl|Hg17|chr5 (151168311-151169424)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-867, gnl|bosTau2|chr7 (43603378-43604192)
               

               
               85-867, gnl|Hg17|chr5 (151168311-151169424)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.284616)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.284616)

	85-867, gnl\|bosTau2\|chr7 (43603378-43604192)
	85-867, gnl\|Hg17\|chr5 (151168311-151169424)