Ss1.1-rlnt08c_i1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAACCAAGGACATCCTGACCACTCACCCCTTCACCAAGATCTCCAACTGGAGCAGTGGC AACACCTACTTCCACATCACCATTGGGAACCTGGTGCGCGGGAGCAAACTTCTCTGTGAG ACGTCACTGGGCTACAAGATGGATGACCTCCTGACTTCCTATATTAGCCAGATGCTCACG GCCATGAGCAAACAGCGGGGCTCCAGGAGTGGCAAGTGAACAGTGGGAAGGTGGCACTGG CTCAGGACCATCAGTTGTTACCTCTGTAGCCATGGAACACCCTTTGCCATGCAGGCAGGG AGGCAAGCCCGGTTGGCCACCACTGACCACACCAATGTGGCCTCTAACCCTTCTTCTAAT GAGGTGGCCTTGCCAGGATGCAGAACTCCCCTCCACCCACCCCAAGCACCTGGTTGGTTC TAGTCCTGGATTGCTGTGGCCTTCCCAGTGGTAAGAGCCCGTGCTCCTTGGATGCCATTC TTAGACCAGCTCTATCACGCAACCTCTTTGGCTTTCTGTGCACCACCAGGAAAGGGAATC AAAAGGACAATGTAATTTTCCTTGCTGGGAACAACCAAACCAAGACTATTCTGAAACCTA AGGGACTGGCTCAATTCCCCTAAGTCCAGGAGCCTCAGCTGGGGTAAGGGAGACAGGTCA CTTTTACATACTACAGTGTGAGTGCTGAGCCCCTGTTCAAGTCTCCCCTGATCATCTCAG GGCATAAAGCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAACCAAGGACATCCTGACCACTCACCCCTTCACCAAGATCTCCAACTGGAGCAGTGGC AACACCTACTTCCACATCACCATTGGGAACCTGGTGCGCGGGAGCAAACTTCTCTGTGAG ACGTCACTGGGCTACAAGATGGATGACCTCCTGACTTCCTATATTAGCCAGATGCTCACG GCCATGAGCAAACAGCGGGGCTCCAGGAGTGGCAAGTGAACAGTGGGAAGGTGGCACTGG CTCAGGACCATCAGTTGTTACCTCTGTAGCCATGGAACACCCTTTGCCATGCAGGCAGGG AGGCAAGCCCGGTTGGCCACCACTGACCACACCAATGTGGCCTCTAACCCTTCTTCTAAT GAGGTGGCCTTGCCAGGATGCAGAACTCCCCTCCACCCACCCCAAGCACCTGGTTGGTTC TAGTCCTGGATTGCTGTGGCCTTCCCAGTGGTAAGAGCCCGTGCTCCTTGGATGCCATTC TTAGACCAGCTCTATCACGCAACCTCTTTGGCTTTCTGTGCACCACCAGGAAAGGGAATC AAAAGGACAATGTAATTTTCCTTGCTGGGAACAACCAAACCAAGACTATTCTGAAACCTA AGGGACTGGCTCAATTCCCCTAAGTCCAGGAGCCTCAGCTGGGGTAAGGGAGACAGGTCA CTTTTACATACTACAGTGTGAGTGCTGAGCCCCTGTTCAAGTCTCCCCTGATCATCTCAG GGCATAAAGCAT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 5-130, - strand, RNAz p=0.862476 | |
| 228-345, + strand, RNAz p=0.782553 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 5-130, - strand, RNAz p=0.862476 | |
| 228-345, + strand, RNAz p=0.782553 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of U55208, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 5-130, gnl|bosTau2|chr15 (35668853-35668978) | |
| 5-130, gnl|canFam2|chr21 (24544158-24544014) | |
| 5-130, gnl|danRer3|chr21 (14998270-14998407) | |
| 5-130, gnl|dasNov1|scaffold_189454 (4196-4053) | |
| 5-130, gnl|echTel1|scaffold_325307 (1719-1575) | |
| 5-130, gnl|fr1|chrUn (102845841-102845985) | |
| 5-130, gnl|galGal2|chr1_random (103907-103771) | |
| 5-130, gnl|hg17|chr11 (76602535-76602679) | |
| 5-130, gnl|Hg17|chr11 (76602548-76602673) | |
| 5-130, gnl|loxAfr1|scaffold_12493 (3471-3327) | |
| 5-130, gnl|mm7|chr7 (94084235-94084092) | |
| 5-130, gnl|Mm7|chr7 (94084221-94084096) | |
| 5-130, gnl|monDom2|scaffold_46 (13107453-13107310) | |
| 5-130, gnl|oryCun1|scaffold_178831 (9649-9505) | |
| 5-130, gnl|panTro1|chr9 (77900201-77900345) | |
| 5-130, gnl|rheMac2|chr14 (75393322-75393466) | |
| 5-130, gnl|rn3|chr1 (155371723-155371580) | |
| 5-130, gnl|tetNig1|chrUn_random (29651257-29651383) | |
| 5-130, gnl|xenTro1|scaffold_262 (1024855-1024712) | |
| 228-730, gnl|bosTau2|chr15 (35674981-35675476) | |
| 228-730, gnl|Hg17|chr11 (76603427-76603916) | |
| 228-730, gnl|Mm7|chr7 (94083523-94082974) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-130, gnl|bosTau2|chr15 (35668853-35668978) | |
| 5-130, gnl|canFam2|chr21 (24544158-24544014) | |
| 5-130, gnl|danRer3|chr21 (14998270-14998407) | |
| 5-130, gnl|dasNov1|scaffold_189454 (4196-4053) | |
| 5-130, gnl|echTel1|scaffold_325307 (1719-1575) | |
| 5-130, gnl|fr1|chrUn (102845841-102845985) | |
| 5-130, gnl|galGal2|chr1_random (103907-103771) | |
| 5-130, gnl|hg17|chr11 (76602535-76602679) | |
| 5-130, gnl|Hg17|chr11 (76602548-76602673) | |
| 5-130, gnl|loxAfr1|scaffold_12493 (3471-3327) | |
| 5-130, gnl|mm7|chr7 (94084235-94084092) | |
| 5-130, gnl|Mm7|chr7 (94084221-94084096) | |
| 5-130, gnl|monDom2|scaffold_46 (13107453-13107310) | |
| 5-130, gnl|oryCun1|scaffold_178831 (9649-9505) | |
| 5-130, gnl|panTro1|chr9 (77900201-77900345) | |
| 5-130, gnl|rheMac2|chr14 (75393322-75393466) | |
| 5-130, gnl|rn3|chr1 (155371723-155371580) | |
| 5-130, gnl|tetNig1|chrUn_random (29651257-29651383) | |
| 5-130, gnl|xenTro1|scaffold_262 (1024855-1024712) | |
| 228-730, gnl|bosTau2|chr15 (35674981-35675476) | |
| 228-730, gnl|Hg17|chr11 (76603427-76603916) | |
| 228-730, gnl|Mm7|chr7 (94083523-94082974) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| elu (0.385356) | |
| fcc (0.197785) | |
| lnt (0.142308) | |
| pla (0.133672) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| fcc (0.197785) | |
| lnt (0.142308) | |
| pla (0.133672) |