Non-Coding RNA Search

Ss1.1-rlnt09c_d12.5

Sequence:


               
               TGTGAGGTACTGCTGACCAGTGCTGCGCCAAGGGCCACAGGGATGGAAGTTTCCAGGAGG
AGAGAGACTCTGTGGAACATTAATGCCTCAAAGACTCTCCGTGGTTCCCTGCACTCAGAC
AGAGGGACTGGGCTGATCTGGGCCCCAGAACAGTCAGTGTGACAGACTCAGCATCACCAG
AGCCAGTGCCCCAGGTGCTGGGTGATGATGCCCCACCTGGATTCTTAGCCACATGAGGAC
CCATCAGCAATGCCTTCTCCCAGGATGCTCTCCCCAGCATCCCGGACACATCTTTTTATA
GCCCAGATTCTCAGGTACCAGGAGCTATAGTTTTATTTCATTGTCTAGGTCCTAGCACTT
AACAGAAGAGCTTTTAAATATTCTTTTATTTTATTTTTGGTTAAGAGTTTTGTACTTTAC
ATGTTTTAATACCACCAACCAGACTTTTTTCTAGCTGATCATCTCGAAAGTGTTGCTATT
TCTTACTGACAATAAAAGTGATCCTAAGACTCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGAGGTACTGCTGACCAGTGCTGCGCCAAGGGCCACAGGGATGGAAGTTTCCAGGAGG
AGAGAGACTCTGTGGAACATTAATGCCTCAAAGACTCTCCGTGGTTCCCTGCACTCAGAC
AGAGGGACTGGGCTGATCTGGGCCCCAGAACAGTCAGTGTGACAGACTCAGCATCACCAG
AGCCAGTGCCCCAGGTGCTGGGTGATGATGCCCCACCTGGATTCTTAGCCACATGAGGAC
CCATCAGCAATGCCTTCTCCCAGGATGCTCTCCCCAGCATCCCGGACACATCTTTTTATA
GCCCAGATTCTCAGGTACCAGGAGCTATAGTTTTATTTCATTGTCTAGGTCCTAGCACTT
AACAGAAGAGCTTTTAAATATTCTTTTATTTTATTTTTGGTTAAGAGTTTTGTACTTTAC
ATGTTTTAATACCACCAACCAGACTTTTTTCTAGCTGATCATCTCGAAAGTGTTGCTATT
TCTTACTGACAATAAAAGTGATCCTAAGACTCAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               265-371, - strand, RNAz p=0.517936

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               265-371, - strand, RNAz p=0.517936

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-514, gnl|bosTau2|chr20 (1915480-1915996)
               

               
               1-514, gnl|canFam2|chr4 (44979434-44978948)
               

               
               1-514, gnl|dasNov1|scaffold_54904 (11741-11242)
               

               
               1-514, gnl|echTel1|scaffold_305911 (168856-169363)
               

               
               1-514, gnl|hg17|chr5 (169442407-169442928)
               

               
               1-514, gnl|Hg17|chr5 (169442436-169442960)
               

               
               1-514, gnl|loxAfr1|scaffold_3443 (8745-9260)
               

               
               1-514, gnl|mm7|chr11 (34179713-34179241)
               

               
               1-514, gnl|Mm7|chr11 (34179682-34179209)
               

               
               1-514, gnl|monDom2|scaffold_6 (31474139-31473565)
               

               
               1-514, gnl|oryCun1|scaffold_214654 (481529-482034)
               

               
               1-514, gnl|panTro1|chr4 (176691767-176692288)
               

               
               1-514, gnl|rheMac2|chr6 (166464230-166464751)
               

               
               1-514, gnl|rn3|chr10 (19208583-19207952)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-514, gnl|bosTau2|chr20 (1915480-1915996)
               

               
               1-514, gnl|canFam2|chr4 (44979434-44978948)
               

               
               1-514, gnl|dasNov1|scaffold_54904 (11741-11242)
               

               
               1-514, gnl|echTel1|scaffold_305911 (168856-169363)
               

               
               1-514, gnl|hg17|chr5 (169442407-169442928)
               

               
               1-514, gnl|Hg17|chr5 (169442436-169442960)
               

               
               1-514, gnl|loxAfr1|scaffold_3443 (8745-9260)
               

               
               1-514, gnl|mm7|chr11 (34179713-34179241)
               

               
               1-514, gnl|Mm7|chr11 (34179682-34179209)
               

               
               1-514, gnl|monDom2|scaffold_6 (31474139-31473565)
               

               
               1-514, gnl|oryCun1|scaffold_214654 (481529-482034)
               

               
               1-514, gnl|panTro1|chr4 (176691767-176692288)
               

               
               1-514, gnl|rheMac2|chr6 (166464230-166464751)
               

               
               1-514, gnl|rn3|chr10 (19208583-19207952)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               lnt (0.142308)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               thg (0.126791)

	1-514, gnl\|bosTau2\|chr20 (1915480-1915996)
	1-514, gnl\|canFam2\|chr4 (44979434-44978948)
	1-514, gnl\|dasNov1\|scaffold_54904 (11741-11242)
	1-514, gnl\|echTel1\|scaffold_305911 (168856-169363)
	1-514, gnl\|hg17\|chr5 (169442407-169442928)
	1-514, gnl\|Hg17\|chr5 (169442436-169442960)
	1-514, gnl\|loxAfr1\|scaffold_3443 (8745-9260)
	1-514, gnl\|mm7\|chr11 (34179713-34179241)
	1-514, gnl\|Mm7\|chr11 (34179682-34179209)
	1-514, gnl\|monDom2\|scaffold_6 (31474139-31473565)
	1-514, gnl\|oryCun1\|scaffold_214654 (481529-482034)
	1-514, gnl\|panTro1\|chr4 (176691767-176692288)
	1-514, gnl\|rheMac2\|chr6 (166464230-166464751)
	1-514, gnl\|rn3\|chr10 (19208583-19207952)