Non-Coding RNA Search

Ss1.1-rlnt09c_h7.5

Sequence:


               
               AGTGGTAGCGGGCTATGGCGACGTAGGCAAGGGCTGTGCCCAGGCCCTGAGGGGTTTCGG
GGCCCGCGTCATCATCACGGAGATCGACCCCATCAACGCACTTCAGGCTGCCATGGAGGG
CTATGAGGTGACCACCATGGATGAGGCCTGTCAGGAGGGCAACATCTTTGTCACCACCAC
GGGCTGTATCGACATCATCCTCGGCCGGCACTTTGAGCAGATGAAAGATGACGCCATCGT
GTGTAACATCGGACACTTTGACGTGGAGATCGATGTCAAGTGGCTGAACGAGAACGCAGT
GGAGAAGGTGAACATCAAGCCCCAGGTGGACCGCTACTTGTTGAAGAATGGGCACCGCAT
CATCCTGCTGGCCGAGGGCCGGCTAGTCAACCTAGGCTGTGCCATGGGCCACCCCAGCTT
CGTGATGAGCAACTCCTTCACCAACCAGGTGTTGGCACAGATTGAACTGTGGACCCACCC
AGACAAGTACCCTGTCGGGGTCCACTTCCTGCCCAAGAAGCTGGATGAAGCAGTGGCTGA
AGCCCACCTGGGCAAGCTGAACGTGAAGCTGACCAAGCTGACTGAGAAGCAGGCCCAGTA
CCTGGGCATGTCTCGTGAGGGCCCCTTCAAGCCTGATCATTACCGCTATTGAGAACCAGA
CCAGCCCTTTGCCTTCCAGTTGCTGTCCTTGCCTGGGTCCCACCTCTCCTCCCCAAGAGC
AAATGGCACCAACTTTGACATTGGTTTGATAATGTCCCCCATAGACTCCCTGGGGCTGAT
CACTCAGTCTTTGGCCTTTGCTGCATCCCTCATACTATTCCAAGTCTGGTTTTGGGAGGT
GAGATGTCCCTCCTCAAGCCCTGGTCACAGTGGAGGTACACGGGAGTAACCCACAGGGAA
CCACGAGCTTGGGAGTTTTGGATCTGCTCACTCAGCCATTCCTTCCTTAGGCTGAGAGTT
GGCAGTGGTGGTCACAAAGCCCATGCACTTTACCATCCAGGCCCTCATCTTGCCTATGGA
CTTTATACCCATGTTCTTGACTTAGAGGTTCATAAGTTCTTCAGCCCATGACAGATGAGA
AGGAGCCGCGTCAAAGGGTGTGGAGGAACTGCTGGAGTTTGAATGCTCCTGAAAGCCTGG
CTTAGTGCTTGGCATTCTCTTAAACCTCAGAACACTGAGGTTGGTACTTTTGAGTCCCTG
TTTTACAGGGGTTGGAATATATTGTTAAGGGATAGCCAAGAAAGGACAAGAGAAGTGACA
GCCAGTGGTTGAGAGGGGCCAGAGAGACATAAAAGCAACACAGATCTGCCACCACATCAT
AACTTGATGGTTCCTATCACAACCCTGGGTCAAAAAGGTTAATTTGGTCTATAATGTTTA
TATAATGTTTATAATGTTAAAAGAGAGCAAGATGGTGGGTTAATAAAAGTTTTGGTGCCT
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGTAGCGGGCTATGGCGACGTAGGCAAGGGCTGTGCCCAGGCCCTGAGGGGTTTCGG
GGCCCGCGTCATCATCACGGAGATCGACCCCATCAACGCACTTCAGGCTGCCATGGAGGG
CTATGAGGTGACCACCATGGATGAGGCCTGTCAGGAGGGCAACATCTTTGTCACCACCAC
GGGCTGTATCGACATCATCCTCGGCCGGCACTTTGAGCAGATGAAAGATGACGCCATCGT
GTGTAACATCGGACACTTTGACGTGGAGATCGATGTCAAGTGGCTGAACGAGAACGCAGT
GGAGAAGGTGAACATCAAGCCCCAGGTGGACCGCTACTTGTTGAAGAATGGGCACCGCAT
CATCCTGCTGGCCGAGGGCCGGCTAGTCAACCTAGGCTGTGCCATGGGCCACCCCAGCTT
CGTGATGAGCAACTCCTTCACCAACCAGGTGTTGGCACAGATTGAACTGTGGACCCACCC
AGACAAGTACCCTGTCGGGGTCCACTTCCTGCCCAAGAAGCTGGATGAAGCAGTGGCTGA
AGCCCACCTGGGCAAGCTGAACGTGAAGCTGACCAAGCTGACTGAGAAGCAGGCCCAGTA
CCTGGGCATGTCTCGTGAGGGCCCCTTCAAGCCTGATCATTACCGCTATTGAGAACCAGA
CCAGCCCTTTGCCTTCCAGTTGCTGTCCTTGCCTGGGTCCCACCTCTCCTCCCCAAGAGC
AAATGGCACCAACTTTGACATTGGTTTGATAATGTCCCCCATAGACTCCCTGGGGCTGAT
CACTCAGTCTTTGGCCTTTGCTGCATCCCTCATACTATTCCAAGTCTGGTTTTGGGAGGT
GAGATGTCCCTCCTCAAGCCCTGGTCACAGTGGAGGTACACGGGAGTAACCCACAGGGAA
CCACGAGCTTGGGAGTTTTGGATCTGCTCACTCAGCCATTCCTTCCTTAGGCTGAGAGTT
GGCAGTGGTGGTCACAAAGCCCATGCACTTTACCATCCAGGCCCTCATCTTGCCTATGGA
CTTTATACCCATGTTCTTGACTTAGAGGTTCATAAGTTCTTCAGCCCATGACAGATGAGA
AGGAGCCGCGTCAAAGGGTGTGGAGGAACTGCTGGAGTTTGAATGCTCCTGAAAGCCTGG
CTTAGTGCTTGGCATTCTCTTAAACCTCAGAACACTGAGGTTGGTACTTTTGAGTCCCTG
TTTTACAGGGGTTGGAATATATTGTTAAGGGATAGCCAAGAAAGGACAAGAGAAGTGACA
GCCAGTGGTTGAGAGGGGCCAGAGAGACATAAAAGCAACACAGATCTGCCACCACATCAT
AACTTGATGGTTCCTATCACAACCCTGGGTCAAAAAGGTTAATTTGGTCTATAATGTTTA
TATAATGTTTATAATGTTAAAAGAGAGCAAGATGGTGGGTTAATAAAAGTTTTGGTGCCT
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|58801555|ref|NP_001011727.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58801555|ref|NP_001011727.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               812-931, - strand, RNAz p=0.65712

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               812-931, - strand, RNAz p=0.65712

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-945, gnl|bosTau2|chr11 (87150392-87151323)
               

               
               2-945, gnl|Hg17|chr11 (85246422-85247350)
               

               
               2-945, gnl|Mm7|chr16 (45933284-45932378)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-945, gnl|bosTau2|chr11 (87150392-87151323)
               

               
               2-945, gnl|Hg17|chr11 (85246422-85247350)
               

               
               2-945, gnl|Mm7|chr16 (45933284-45932378)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               ill (0.351185)
               

               
               cov (0.264306)
               

               
               ldo (0.194005)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               cov (0.264306)
               

               
               ldo (0.194005)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	2-945, gnl\|bosTau2\|chr11 (87150392-87151323)
	2-945, gnl\|Hg17\|chr11 (85246422-85247350)
	2-945, gnl\|Mm7\|chr16 (45933284-45932378)

	ill (0.351185)
	cov (0.264306)
	ldo (0.194005)
	mcp (0.170648)
	nje (0.16592)
	csp (0.161186)
	cag (0.151194)
	hyp (0.142837)
	lnt (0.142308)
	ste (0.135208)
	cly (0.120642)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)