Non-Coding RNA Search

Ss1.1-rlnt09c_p12.5

Sequence:


               
               GGAGAGGAAGTAGCCAAAGACACCAAAGACGAGGGAGGGGAAGTGTCCAGCCAAGGCCTC
CAGGACTCACCCCTAGGGACACAGTCCCGTGGCCACTTCAGCCGCCAGCCAGTGAAGTAT
CCCCGGGGGGGCGTGCGGCCTGTCACCCACCAGCTGTCGGGCTTGGCCCTGGTGGCTTCC
AAATTGTGCGAGGAGACCCCTGTCACATCAGTGCCCCAAGGTAGCTTGCGGAGACGAGGA
CCCGGCCCTACTGCCACCTCCTGTGAGGGCAGCCCTCTTCGACGCGCCCCGCTACCCAAG
CATTTTGAGATCACTCAGGAAACAGCCCGGCTACTCTCCAAGCTGCACAGTGAGTCTGTG
CCCAAGGCCACCTGCTGCCCAGACCCTCAACCTGAGGAAGCCGAGGACCATCTCTGACCA
TTCCAGCACTTTGACCAAGAAGCCCAGGATTGAGAAGATGGACCAGGAATTCAATGTTGG
GTTGTCTGGAGAGTTCCTATGGGGAAAGACTACACCGCCTAGGGGAGAACTAAAACCCTT
TTGGGGGCAATGTATAGGATTCCCTCACTAGACACAGGTTAGTGTTGAGCATCAGGGCCA
CTCAGGTTCAGAGGTCATTCAGGTTCAATACTCAGGGTCAATACAAGTCATGAGATCCTT
GAGGTCCACTCTAGTCTCTGACCCCTGGGACAGAGGTGCTTTTGGCTAATTTGATTGTGG
CCACTCCCCCATCTCTGTGCCTCATTAGTTGATCCCGAGTGACCAGCTCTTGCAGAGTGT
GGGCAACCCAGACTCCACCCACTCACAGGAATCCTGGTAGTCCCTGGGGTCCTGTGGCCT
CTGAATAAATCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAGGAAGTAGCCAAAGACACCAAAGACGAGGGAGGGGAAGTGTCCAGCCAAGGCCTC
CAGGACTCACCCCTAGGGACACAGTCCCGTGGCCACTTCAGCCGCCAGCCAGTGAAGTAT
CCCCGGGGGGGCGTGCGGCCTGTCACCCACCAGCTGTCGGGCTTGGCCCTGGTGGCTTCC
AAATTGTGCGAGGAGACCCCTGTCACATCAGTGCCCCAAGGTAGCTTGCGGAGACGAGGA
CCCGGCCCTACTGCCACCTCCTGTGAGGGCAGCCCTCTTCGACGCGCCCCGCTACCCAAG
CATTTTGAGATCACTCAGGAAACAGCCCGGCTACTCTCCAAGCTGCACAGTGAGTCTGTG
CCCAAGGCCACCTGCTGCCCAGACCCTCAACCTGAGGAAGCCGAGGACCATCTCTGACCA
TTCCAGCACTTTGACCAAGAAGCCCAGGATTGAGAAGATGGACCAGGAATTCAATGTTGG
GTTGTCTGGAGAGTTCCTATGGGGAAAGACTACACCGCCTAGGGGAGAACTAAAACCCTT
TTGGGGGCAATGTATAGGATTCCCTCACTAGACACAGGTTAGTGTTGAGCATCAGGGCCA
CTCAGGTTCAGAGGTCATTCAGGTTCAATACTCAGGGTCAATACAAGTCATGAGATCCTT
GAGGTCCACTCTAGTCTCTGACCCCTGGGACAGAGGTGCTTTTGGCTAATTTGATTGTGG
CCACTCCCCCATCTCTGTGCCTCATTAGTTGATCCCGAGTGACCAGCTCTTGCAGAGTGT
GGGCAACCCAGACTCCACCCACTCACAGGAATCCTGGTAGTCCCTGGGGTCCTGTGGCCT
CTGAATAAATCG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               42-630, gnl|bosTau2|chr7 (3847805-3848399)
               

               
               42-630, gnl|Hg17|chr19 (19602147-19601502)
               

               
               42-630, gnl|Mm7|chr8 (68275266-68275893)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-630, gnl|bosTau2|chr7 (3847805-3848399)
               

               
               42-630, gnl|Hg17|chr19 (19602147-19601502)
               

               
               42-630, gnl|Mm7|chr8 (68275266-68275893)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lnt (0.426925)
               

               
               cbl (0.344392)
               

               
               pla (0.133672)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.426925)
               

               
               cbl (0.344392)
               

               
               pla (0.133672)
               

               
               cly (0.120642)

	42-630, gnl\|bosTau2\|chr7 (3847805-3848399)
	42-630, gnl\|Hg17\|chr19 (19602147-19601502)
	42-630, gnl\|Mm7\|chr8 (68275266-68275893)