Ss1.1-rlnt11c_a6.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAATTCGGCAGGTCACGGTGGCGGAGGCGAGATGACGAAGGGAACGTCATCGTTTGGA AAGCGTCGGAATAAGACGCACACGTTGTGCCGCCGCTGTGGCTCTAAGGCCTACCATCTC CAGAAGTCGACCTGTGGCAAGTGTGGCTACCCTGCCAAGCGAAAGAGGAAGTATAACTGG AGTGCGAAAGCTAAAAGACGAAACACCACCGGGACTGGTCGAATGAGGCACCTAAAAATT GTATATCGCAGATTCAGGCATGGATTCCGTGAAGGAACAACACCTAAACCCAAGAGGGCA GCTGTTGCGGCATCCAGTTCATCTTAAGGATTTCAGCAAAGTCACGCAATAAATGTTCTG GTTTTAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAATTCGGCAGGTCACGGTGGCGGAGGCGAGATGACGAAGGGAACGTCATCGTTTGGA AAGCGTCGGAATAAGACGCACACGTTGTGCCGCCGCTGTGGCTCTAAGGCCTACCATCTC CAGAAGTCGACCTGTGGCAAGTGTGGCTACCCTGCCAAGCGAAAGAGGAAGTATAACTGG AGTGCGAAAGCTAAAAGACGAAACACCACCGGGACTGGTCGAATGAGGCACCTAAAAATT GTATATCGCAGATTCAGGCATGGATTCCGTGAAGGAACAACACCTAAACCCAAGAGGGCA GCTGTTGCGGCATCCAGTTCATCTTAAGGATTTCAGCAAAGTCACGCAATAAATGTTCTG GTTTTAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 13-386, gnl|bosTau2|chr25 (4372306-4371933) | |
| 13-386, gnl|Hg17|chr4 (40334659-40335033) | |
| 13-386, gnl|Mm7|chr5 (114324375-114324011) | |
| 36-176, gnl|bosTau2|chr20 (19706208-19706348) | |
| 36-176, gnl|canFam2|chr4 (71754581-71754440) | |
| 36-176, gnl|canFam2|chr4 (71754584-71754429) | |
| 36-176, gnl|danRer3|chr19 (7994667-7994526) | |
| 36-176, gnl|danRer3|chr19 (7994670-7994510) | |
| 36-176, gnl|dasNov1|scaffold_109873 (1523-1650) | |
| 36-176, gnl|dasNov1|scaffold_14567 (76741-76901) | |
| 36-176, gnl|echTel1|scaffold_311989 (41059-41197) | |
| 36-176, gnl|echTel1|scaffold_311989 (41053-41212) | |
| 36-176, gnl|fr1|chrUn (58997142-58996999) | |
| 36-176, gnl|fr1|chrUn (58997145-58996987) | |
| 36-176, gnl|galGal2|chrZ (6024509-6024658) | |
| 36-176, gnl|hg17|chr12 (46735168-46735326) | |
| 36-176, gnl|hg17|chr5 (40870324-40870483) | |
| 36-176, gnl|Hg17|chr5 (40870466-40870326) | |
| 36-176, gnl|loxAfr1|scaffold_45456 (1514-1661) | |
| 36-176, gnl|loxAfr1|scaffold_45456 (1511-1650) | |
| 36-176, gnl|mm7|chr15 (4942298-4942160) | |
| 36-176, gnl|mm7|chr15 (4942304-4942145) | |
| 36-176, gnl|Mm7|chr15 (4942160-4942300) | |
| 36-176, gnl|monDom2|scaffold_20 (30167307-30167155) | |
| 36-176, gnl|monDom2|scaffold_4 (95002022-95002168) | |
| 36-176, gnl|oryCun1|scaffold_132842 (3453-3318) | |
| 36-176, gnl|oryCun1|scaffold_212348 (129260-129108) | |
| 36-176, gnl|panTro1|chr10 (47804086-47804229) | |
| 36-176, gnl|panTro1|chr4 (75678782-75678623) | |
| 36-176, gnl|rheMac2|chr11 (45134550-45134708) | |
| 36-176, gnl|rheMac2|chr6 (40674398-40674557) | |
| 36-176, gnl|rn3|chr2 (54231342-54231204) | |
| 36-176, gnl|rn3|chr2 (54231348-54231189) | |
| 36-176, gnl|tetNig1|chr4 (3989354-3989213) | |
| 36-176, gnl|tetNig1|chr4 (3989357-3989212) | |
| 36-176, gnl|xenTro1|scaffold_469 (289113-288972) | |
| 36-176, gnl|xenTro1|scaffold_469 (289116-288955) | |
| 252-369, gnl|bosTau2|chr20 (19708044-19708164) | |
| 252-369, gnl|canFam2|chr4 (71756323-71756209) | |
| 252-369, gnl|dasNov1|scaffold_109873 (1319-1440) | |
| 252-369, gnl|echTel1|scaffold_311989 (39442-39557) | |
| 252-369, gnl|fr1|chrUn (58997904-58997812) | |
| 252-369, gnl|hg17|chr12 (46734971-46735087) | |
| 252-369, gnl|Hg17|chr5 (40868438-40868318) | |
| 252-369, gnl|loxAfr1|scaffold_45456 (1316-1431) | |
| 252-369, gnl|mm7|chr15 (4943553-4943443) | |
| 252-369, gnl|Mm7|chr15 (4943435-4943552) | |
| 252-369, gnl|monDom2|scaffold_4 (95001832-95001939) | |
| 252-369, gnl|oryCun1|scaffold_212348 (129460-129346) | |
| 252-369, gnl|panTro1|chr10 (47803889-47804005) | |
| 252-369, gnl|rheMac2|chr11 (45134353-45134469) | |
| 252-369, gnl|rn3|chr2 (54232549-54232436) | |
| 252-369, gnl|tetNig1|chr4 (3990074-3990004) | |
| 252-369, gnl|xenTro1|scaffold_469 (289283-289180) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-386, gnl|bosTau2|chr25 (4372306-4371933) | |
| 13-386, gnl|Hg17|chr4 (40334659-40335033) | |
| 13-386, gnl|Mm7|chr5 (114324375-114324011) | |
| 36-176, gnl|bosTau2|chr20 (19706208-19706348) | |
| 36-176, gnl|canFam2|chr4 (71754581-71754440) | |
| 36-176, gnl|canFam2|chr4 (71754584-71754429) | |
| 36-176, gnl|danRer3|chr19 (7994667-7994526) | |
| 36-176, gnl|danRer3|chr19 (7994670-7994510) | |
| 36-176, gnl|dasNov1|scaffold_109873 (1523-1650) | |
| 36-176, gnl|dasNov1|scaffold_14567 (76741-76901) | |
| 36-176, gnl|echTel1|scaffold_311989 (41059-41197) | |
| 36-176, gnl|echTel1|scaffold_311989 (41053-41212) | |
| 36-176, gnl|fr1|chrUn (58997142-58996999) | |
| 36-176, gnl|fr1|chrUn (58997145-58996987) | |
| 36-176, gnl|galGal2|chrZ (6024509-6024658) | |
| 36-176, gnl|hg17|chr12 (46735168-46735326) | |
| 36-176, gnl|hg17|chr5 (40870324-40870483) | |
| 36-176, gnl|Hg17|chr5 (40870466-40870326) | |
| 36-176, gnl|loxAfr1|scaffold_45456 (1514-1661) | |
| 36-176, gnl|loxAfr1|scaffold_45456 (1511-1650) | |
| 36-176, gnl|mm7|chr15 (4942298-4942160) | |
| 36-176, gnl|mm7|chr15 (4942304-4942145) | |
| 36-176, gnl|Mm7|chr15 (4942160-4942300) | |
| 36-176, gnl|monDom2|scaffold_20 (30167307-30167155) | |
| 36-176, gnl|monDom2|scaffold_4 (95002022-95002168) | |
| 36-176, gnl|oryCun1|scaffold_132842 (3453-3318) | |
| 36-176, gnl|oryCun1|scaffold_212348 (129260-129108) | |
| 36-176, gnl|panTro1|chr10 (47804086-47804229) | |
| 36-176, gnl|panTro1|chr4 (75678782-75678623) | |
| 36-176, gnl|rheMac2|chr11 (45134550-45134708) | |
| 36-176, gnl|rheMac2|chr6 (40674398-40674557) | |
| 36-176, gnl|rn3|chr2 (54231342-54231204) | |
| 36-176, gnl|rn3|chr2 (54231348-54231189) | |
| 36-176, gnl|tetNig1|chr4 (3989354-3989213) | |
| 36-176, gnl|tetNig1|chr4 (3989357-3989212) | |
| 36-176, gnl|xenTro1|scaffold_469 (289113-288972) | |
| 36-176, gnl|xenTro1|scaffold_469 (289116-288955) | |
| 252-369, gnl|bosTau2|chr20 (19708044-19708164) | |
| 252-369, gnl|canFam2|chr4 (71756323-71756209) | |
| 252-369, gnl|dasNov1|scaffold_109873 (1319-1440) | |
| 252-369, gnl|echTel1|scaffold_311989 (39442-39557) | |
| 252-369, gnl|fr1|chrUn (58997904-58997812) | |
| 252-369, gnl|hg17|chr12 (46734971-46735087) | |
| 252-369, gnl|Hg17|chr5 (40868438-40868318) | |
| 252-369, gnl|loxAfr1|scaffold_45456 (1316-1431) | |
| 252-369, gnl|mm7|chr15 (4943553-4943443) | |
| 252-369, gnl|Mm7|chr15 (4943435-4943552) | |
| 252-369, gnl|monDom2|scaffold_4 (95001832-95001939) | |
| 252-369, gnl|oryCun1|scaffold_212348 (129460-129346) | |
| 252-369, gnl|panTro1|chr10 (47803889-47804005) | |
| 252-369, gnl|rheMac2|chr11 (45134353-45134469) | |
| 252-369, gnl|rn3|chr2 (54232549-54232436) | |
| 252-369, gnl|tetNig1|chr4 (3990074-3990004) | |
| 252-369, gnl|xenTro1|scaffold_469 (289283-289180) |
| Expressed library(ies): 68 entry(ies) | More info |
| Expressed library(ies): 68 entry(ies) | Help | Less info |
| lnt (4.12694) | |
| cmu (3.91426) | |
| ese (3.79507) | |
| sto (3.59648) | |
| mcp (3.58362) | |
| nca (3.42184) | |
| amn (3.34169) | |
| cbe (2.87081) | |
| eje (2.47084) | |
| jca (2.39316) | |
| col (2.34009) | |
| eep (2.32872) | |
| med (2.32504) | |
| nje (2.32288) | |
| fty (2.28592) | |
| ill (2.2827) | |
| nms (2.13858) | |
| ecc (1.9556) | |
| nco (1.94081) | |
| elu (1.92678) | |
| fce (1.90114) | |
| nmm (1.85923) | |
| eru (1.80072) | |
| ton (1.755) | |
| eye (1.70503) | |
| nep (1.65532) | |
| ece (1.60514) | |
| cut (1.52931) | |
| pty (1.42714) | |
| fli (1.42017) | |
| ebs (1.41961) | |
| fcc (1.38449) | |
| nlu (1.34177) | |
| csp (1.28949) | |
| cag (1.20956) | |
| nbm (1.09257) | |
| mas (1.05152) | |
| hlv (0.974795) | |
| eli (0.910885) | |
| fhi (0.847889) | |
| ute (0.796707) | |
| bfe (0.749288) | |
| cly (0.723851) | |
| csk (0.70373) | |
| fbs (0.701385) | |
| cje (0.660939) | |
| jej (0.593531) | |
| hyp (0.571347) | |
| pan (0.471921) | |
| cli (0.458435) | |
| cov (0.396458) | |
| duo (0.345602) | |
| cte (0.29274) | |
| spc (0.226732) | |
| aor (0.195274) | |
| sag (0.182715) | |
| gul (0.177588) | |
| rec (0.17307) | |
| cki (0.165235) | |
| mga (0.160205) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| che (0.136314) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| cty (0.10408) |
| Expressed library(ies): 68 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (4.12694) | |
| cmu (3.91426) | |
| ese (3.79507) | |
| sto (3.59648) | |
| mcp (3.58362) | |
| nca (3.42184) | |
| amn (3.34169) | |
| cbe (2.87081) | |
| eje (2.47084) | |
| jca (2.39316) | |
| col (2.34009) | |
| eep (2.32872) | |
| med (2.32504) | |
| nje (2.32288) | |
| fty (2.28592) | |
| ill (2.2827) | |
| nms (2.13858) | |
| ecc (1.9556) | |
| nco (1.94081) | |
| elu (1.92678) | |
| fce (1.90114) | |
| nmm (1.85923) | |
| eru (1.80072) | |
| ton (1.755) | |
| eye (1.70503) | |
| nep (1.65532) | |
| ece (1.60514) | |
| cut (1.52931) | |
| pty (1.42714) | |
| fli (1.42017) | |
| ebs (1.41961) | |
| fcc (1.38449) | |
| nlu (1.34177) | |
| csp (1.28949) | |
| cag (1.20956) | |
| nbm (1.09257) | |
| mas (1.05152) | |
| hlv (0.974795) | |
| eli (0.910885) | |
| fhi (0.847889) | |
| ute (0.796707) | |
| bfe (0.749288) | |
| cly (0.723851) | |
| csk (0.70373) | |
| fbs (0.701385) | |
| cje (0.660939) | |
| jej (0.593531) | |
| hyp (0.571347) | |
| pan (0.471921) | |
| cli (0.458435) | |
| cov (0.396458) | |
| duo (0.345602) | |
| cte (0.29274) | |
| spc (0.226732) | |
| aor (0.195274) | |
| sag (0.182715) | |
| gul (0.177588) | |
| rec (0.17307) | |
| cki (0.165235) | |
| mga (0.160205) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| che (0.136314) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| cty (0.10408) |