Non-Coding RNA Search

Ss1.1-rlnt11c_g16.5

Sequence:


               
               TACAGCTTTTGGAGCAATGACTTTTGAACTCTAGCCACATGGTTAACGAGTGAACTACAT
GACTTTGGTTTCATGTGCAGTGTGCATTTCCACCAATCCAAAGTACTGTACTTTCATGGA
CTATAAAGTTTCCTTTGCAATATTCATTCTTACATAGTCCCTTGTGGTGATTATACTTCT
CATTATTTAAATGTTTGAAAAGGTTCACTATGAATTTTATCTAGATCCTAAGTGCAAGAC
TTTCTGAACTATTGCAGTCTTCCTCCATCCACCTGAAATGTTATAAGATATGAAACATGT
GGAGAGATGCAGTGCAAATCCTATAATGCACTTTGATATAGTATATTAATTATCTTCTAT
TAATTAAAGTATGTCCCAATAAATATATCCATAATCTGGGTCTTCTACCAAAAATCAAAC
TTAGAAAGAGGTCATTCAGGTTATACCAAGACAAGAAAAGTTTGAGGAACTTTCGCAGAG
CATCTCTGCTTAGGCATGGGGAAAAGAAGCACTAGAGTTGTGTTGATTATTACCTATCTT
AAGAGTAAAACAAAGCTGTTATTATAGGGTCTATTAGTTTAAGTCTTCAGCTTACTTCTA
CAAGACTGGTTTAATATGGACCAGTTTTTTCTGGAACCTACAAAAACCATAAACAACCAA
GATCTATGAAATAATTTTTCCTCTTAGAAGACCTAACATTGTACTTTCCAGCTTATTGAA
AGTAATTAAATATGTGTTAATTGCGTATATTTTAGTAACTTCCTAAGACATACTGGTACA
TATTTTAGTATAGAAGATTATCAGGTACAAGAATTATATTCTGCTACTTGGTGACAAATA
GTGCCAATTATAAACCTAAATCGTGATCTTAAAGGTCAAGGTGATAGCTAGAACAAAGTT
TAACCTTGATCCATTTTAGTAGGTTCCTTTATATGTTAGGTCCGGAAGTAACCTTAGGTT
TAAAATATTGAAATAGAACTGAAAGATTAGGAAAACTTGTATATCTTGCGGCAAATGATA
CCTGCATGTTAATAAAGACTATTATTGACTGAAAGGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACAGCTTTTGGAGCAATGACTTTTGAACTCTAGCCACATGGTTAACGAGTGAACTACAT
GACTTTGGTTTCATGTGCAGTGTGCATTTCCACCAATCCAAAGTACTGTACTTTCATGGA
CTATAAAGTTTCCTTTGCAATATTCATTCTTACATAGTCCCTTGTGGTGATTATACTTCT
CATTATTTAAATGTTTGAAAAGGTTCACTATGAATTTTATCTAGATCCTAAGTGCAAGAC
TTTCTGAACTATTGCAGTCTTCCTCCATCCACCTGAAATGTTATAAGATATGAAACATGT
GGAGAGATGCAGTGCAAATCCTATAATGCACTTTGATATAGTATATTAATTATCTTCTAT
TAATTAAAGTATGTCCCAATAAATATATCCATAATCTGGGTCTTCTACCAAAAATCAAAC
TTAGAAAGAGGTCATTCAGGTTATACCAAGACAAGAAAAGTTTGAGGAACTTTCGCAGAG
CATCTCTGCTTAGGCATGGGGAAAAGAAGCACTAGAGTTGTGTTGATTATTACCTATCTT
AAGAGTAAAACAAAGCTGTTATTATAGGGTCTATTAGTTTAAGTCTTCAGCTTACTTCTA
CAAGACTGGTTTAATATGGACCAGTTTTTTCTGGAACCTACAAAAACCATAAACAACCAA
GATCTATGAAATAATTTTTCCTCTTAGAAGACCTAACATTGTACTTTCCAGCTTATTGAA
AGTAATTAAATATGTGTTAATTGCGTATATTTTAGTAACTTCCTAAGACATACTGGTACA
TATTTTAGTATAGAAGATTATCAGGTACAAGAATTATATTCTGCTACTTGGTGACAAATA
GTGCCAATTATAAACCTAAATCGTGATCTTAAAGGTCAAGGTGATAGCTAGAACAAAGTT
TAACCTTGATCCATTTTAGTAGGTTCCTTTATATGTTAGGTCCGGAAGTAACCTTAGGTT
TAAAATATTGAAATAGAACTGAAAGATTAGGAAAACTTGTATATCTTGCGGCAAATGATA
CCTGCATGTTAATAAAGACTATTATTGACTGAAAGGAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1056, gnl|bosTau2|chr14 (20760294-20761336)
               

               
               1-1056, gnl|Hg17|chr8 (75020814-75019121)
               

               
               1-1056, gnl|Mm7|chr1 (16831930-16830956)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1056, gnl|bosTau2|chr14 (20760294-20761336)
               

               
               1-1056, gnl|Hg17|chr8 (75020814-75019121)
               

               
               1-1056, gnl|Mm7|chr1 (16831930-16830956)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               bfe (0.449573)
               

               
               tbr (0.308356)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               ldo (0.194005)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               ctl (0.153069)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               tbr (0.308356)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               ldo (0.194005)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               ctl (0.153069)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)

	1-1056, gnl\|bosTau2\|chr14 (20760294-20761336)
	1-1056, gnl\|Hg17\|chr8 (75020814-75019121)
	1-1056, gnl\|Mm7\|chr1 (16831930-16830956)

	bfe (0.449573)
	tbr (0.308356)
	kid (0.259471)
	mgp (0.230681)
	ldo (0.194005)
	fbs (0.175346)
	eye (0.170503)
	fco (0.157208)
	ctl (0.153069)
	liv (0.146284)
	lnt (0.142308)
	ret (0.128733)
	ebs (0.118301)