Non-Coding RNA Search

Ss1.1-rlnt11c_k21.5

Sequence:


               
               TCAGAGCTCAGCTGGGCCAGTCACGGGGTCACTTTGGGATGCTGGATCTTCTATCGTCTC
ATAGGCTGAGGCACAGCTGTGGACCTTCGCAGCTCCCTCAAGACCCCTCCTCAGGGTGCC
AGCTCTGATGGGGAATGAGGGAAGGCCCTCTCTCTAATTCTGACCCTCTCTCCATCCTTG
ACCCCCTCAACACCTACACACACACACACACACACACACACACACACACACAGCATTTCC
ATGCCTGCCAATCCCCACCCCACCACAAGGCGGGAAGGGAGTGTAGTCCCTGCTGGGGCT
TAGGGGTGGAGGATGCTTGGGGAAGCAGAGAGGGGGAGATCCAGGGCCTCCCCGCCTTCC
TTATCCCTTTTTATATGCAGTTTGTTATTATCAAATAAAAGTAGGAAATATACAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGAGCTCAGCTGGGCCAGTCACGGGGTCACTTTGGGATGCTGGATCTTCTATCGTCTC
ATAGGCTGAGGCACAGCTGTGGACCTTCGCAGCTCCCTCAAGACCCCTCCTCAGGGTGCC
AGCTCTGATGGGGAATGAGGGAAGGCCCTCTCTCTAATTCTGACCCTCTCTCCATCCTTG
ACCCCCTCAACACCTACACACACACACACACACACACACACACACACACACAGCATTTCC
ATGCCTGCCAATCCCCACCCCACCACAAGGCGGGAAGGGAGTGTAGTCCCTGCTGGGGCT
TAGGGGTGGAGGATGCTTGGGGAAGCAGAGAGGGGGAGATCCAGGGCCTCCCCGCCTTCC
TTATCCCTTTTTATATGCAGTTTGTTATTATCAAATAAAAGTAGGAAATATACAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-310, - strand, RNAz p=0.992108

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-310, - strand, RNAz p=0.992108

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-399, gnl|bosTau2|chr18 (28277654-28278041)
               

               
               1-399, gnl|Hg17|chrX (48135050-48135434)
               

               
               1-399, gnl|Mm7|chrX (6627394-6627016)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-399, gnl|bosTau2|chr18 (28277654-28278041)
               

               
               1-399, gnl|Hg17|chrX (48135050-48135434)
               

               
               1-399, gnl|Mm7|chrX (6627394-6627016)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lnt (0.142308)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               cov (0.132153)

	1-399, gnl\|bosTau2\|chr18 (28277654-28278041)
	1-399, gnl\|Hg17\|chrX (48135050-48135434)
	1-399, gnl\|Mm7\|chrX (6627394-6627016)