Non-Coding RNA Search

Ss1.1-rlnt11c_o4.5

Sequence:


               
               CCCCCGGCTGAGACCTGCCTCCTGCTTGAAGGGTTGCACTCCGTCCCTGGGATGCTGGGC
CTTCCCTGCTCTTTGTCCATCCCCTGTGAGGCCGGCATGAGCCTGTCCCCACTGTGCCTC
ACAGACCTTGGCTGAGCACTGGTTTCCCCCATCTTGCCCAGACCCCAGGGATGTCATCAG
AATGCCTCAAATCAGCTGATTGTCCTGTTTCTGGAAAGGGCGGGTGGGTTCAGGAGTGAG
TTACTGGATGCCGCACCCCTCCCCGGATGGGGGTTGTGCCCAGTCGTCCTGCTGCAGAAG
TCTGTGAACTGTCCTGGCCAGTCCTGGAGAGGGGATGCTATTTATTTTTATATCGTGTAT
ATTTTGTCTGGTCTGCTGAGTCCCTGTCTCACTGAGAGCCACGCTTACCTCAGTAGTTAG
TTGCATACCGTGTGTTGGATAATTTTTTTAAAGAACTTTTTAAAAAGCTTTTTGATCCTT
GGAGGTCTGTAGATTTATTTCCATATGAACTGGTTATTTTGTATAAAGTACATTCTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCGGCTGAGACCTGCCTCCTGCTTGAAGGGTTGCACTCCGTCCCTGGGATGCTGGGC
CTTCCCTGCTCTTTGTCCATCCCCTGTGAGGCCGGCATGAGCCTGTCCCCACTGTGCCTC
ACAGACCTTGGCTGAGCACTGGTTTCCCCCATCTTGCCCAGACCCCAGGGATGTCATCAG
AATGCCTCAAATCAGCTGATTGTCCTGTTTCTGGAAAGGGCGGGTGGGTTCAGGAGTGAG
TTACTGGATGCCGCACCCCTCCCCGGATGGGGGTTGTGCCCAGTCGTCCTGCTGCAGAAG
TCTGTGAACTGTCCTGGCCAGTCCTGGAGAGGGGATGCTATTTATTTTTATATCGTGTAT
ATTTTGTCTGGTCTGCTGAGTCCCTGTCTCACTGAGAGCCACGCTTACCTCAGTAGTTAG
TTGCATACCGTGTGTTGGATAATTTTTTTAAAGAACTTTTTAAAAAGCTTTTTGATCCTT
GGAGGTCTGTAGATTTATTTCCATATGAACTGGTTATTTTGTATAAAGTACATTCTAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               256-365, + strand, RNAz p=0.687574

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-365, + strand, RNAz p=0.687574

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               139-540, gnl|bosTau2|chr5 (66331063-66330670)
               

               
               139-540, gnl|canFam2|chr27 (48225786-48226051)
               

               
               139-540, gnl|dasNov1|scaffold_5989 (3034-3299)
               

               
               139-540, gnl|echTel1|scaffold_305199 (4477-4203)
               

               
               139-540, gnl|galGal2|chr1 (58434752-58435014)
               

               
               139-540, gnl|hg17|chr22 (16412138-16412408)
               

               
               139-540, gnl|loxAfr1|scaffold_10637 (57069-56804)
               

               
               139-540, gnl|mm7|chr6 (120796233-120796497)
               

               
               139-540, gnl|monDom2|scaffold_31 (27453622-27453885)
               

               
               139-540, gnl|oryCun1|scaffold_207514 (19868-19599)
               

               
               139-540, gnl|panTro1|chr23 (16281930-16282202)
               

               
               139-540, gnl|rheMac2|chr10 (62245132-62245401)
               

               
               139-540, gnl|rn3|chr4 (157424134-157424408)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-540, gnl|bosTau2|chr5 (66331063-66330670)
               

               
               139-540, gnl|canFam2|chr27 (48225786-48226051)
               

               
               139-540, gnl|dasNov1|scaffold_5989 (3034-3299)
               

               
               139-540, gnl|echTel1|scaffold_305199 (4477-4203)
               

               
               139-540, gnl|galGal2|chr1 (58434752-58435014)
               

               
               139-540, gnl|hg17|chr22 (16412138-16412408)
               

               
               139-540, gnl|loxAfr1|scaffold_10637 (57069-56804)
               

               
               139-540, gnl|mm7|chr6 (120796233-120796497)
               

               
               139-540, gnl|monDom2|scaffold_31 (27453622-27453885)
               

               
               139-540, gnl|oryCun1|scaffold_207514 (19868-19599)
               

               
               139-540, gnl|panTro1|chr23 (16281930-16282202)
               

               
               139-540, gnl|rheMac2|chr10 (62245132-62245401)
               

               
               139-540, gnl|rn3|chr4 (157424134-157424408)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               col (0.195008)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

	139-540, gnl\|bosTau2\|chr5 (66331063-66330670)
	139-540, gnl\|canFam2\|chr27 (48225786-48226051)
	139-540, gnl\|dasNov1\|scaffold_5989 (3034-3299)
	139-540, gnl\|echTel1\|scaffold_305199 (4477-4203)
	139-540, gnl\|galGal2\|chr1 (58434752-58435014)
	139-540, gnl\|hg17\|chr22 (16412138-16412408)
	139-540, gnl\|loxAfr1\|scaffold_10637 (57069-56804)
	139-540, gnl\|mm7\|chr6 (120796233-120796497)
	139-540, gnl\|monDom2\|scaffold_31 (27453622-27453885)
	139-540, gnl\|oryCun1\|scaffold_207514 (19868-19599)
	139-540, gnl\|panTro1\|chr23 (16281930-16282202)
	139-540, gnl\|rheMac2\|chr10 (62245132-62245401)
	139-540, gnl\|rn3\|chr4 (157424134-157424408)

	col (0.195008)
	ill (0.175593)
	eye (0.170503)
	lnt (0.142308)
	bla (0.124347)
	eje (0.0988338)