Non-Coding RNA Search

Ss1.1-rlnt12c_c6.5

Sequence:


               
               GGCCTTCCCCTCCACACGTGCCCACGTGAGGGTACACACACACACACACACACACACACA
CACACACACACACGAGCGCGTGCATGCATGCGCACCCCGACACCTCAGACATACTTGAAA
CTCAGAGAAAGCACTGAGTCTCCTCATGCCAATTCTTGCCTGCTCTTCTCGCCTTTGGTC
AGAGGAGGTGAGCAGACCTGGCAGCAGCCCATCCTGGGGTTCGGGAAGAGGCAGGCCCAG
GCCCTGGCCCCCAGCCGCCAGCACAGCATGGAGGAGCAAGCAGTGAGGCCCCCCTTCTCG
------------GGGCCTCCAAGTTTGGGCCAAGGN------------TCGGGTTTTGCC
CTGACTCGCTGG------------TGNTCTTTCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTTCCCCTCCACACGTGCCCACGTGAGGGTACACACACACACACACACACACACACA
CACACACACACACGAGCGCGTGCATGCATGCGCACCCCGACACCTCAGACATACTTGAAA
CTCAGAGAAAGCACTGAGTCTCCTCATGCCAATTCTTGCCTGCTCTTCTCGCCTTTGGTC
AGAGGAGGTGAGCAGACCTGGCAGCAGCCCATCCTGGGGTTCGGGAAGAGGCAGGCCCAG
GCCCTGGCCCCCAGCCGCCAGCACAGCATGGAGGAGCAAGCAGTGAGGCCCCCCTTCTCG
------------GGGCCTCCAAGTTTGGGCCAAGGN------------TCGGGTTTTGCC
CTGACTCGCTGG------------TGNTCTTTCACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               102-216, - strand, RNAz p=0.887648

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               102-216, - strand, RNAz p=0.887648

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               70-319, gnl|bosTau2|chr8 (29643221-29642974)
               

               
               70-319, gnl|canFam2|chr11 (56223992-56224233)
               

               
               70-319, gnl|dasNov1|scaffold_88742 (1492-1233)
               

               
               70-319, gnl|echTel1|scaffold_318880 (5516-5284)
               

               
               70-319, gnl|hg17|chr9 (36824100-36824356)
               

               
               70-319, gnl|Hg17|chr9 (36824446-36824166)
               

               
               70-319, gnl|loxAfr1|scaffold_85363 (1814-2067)
               

               
               70-319, gnl|mm7|chr4 (44539383-44539639)
               

               
               70-319, gnl|Mm7|chr4 (44540087-44539452)
               

               
               70-319, gnl|monDom2|scaffold_19 (9168968-9169274)
               

               
               70-319, gnl|panTro1|chr11 (37436210-37436466)
               

               
               70-319, gnl|rheMac2|chr15 (40600396-40600139)
               

               
               70-319, gnl|rn3|chr5 (61010765-61011021)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-319, gnl|bosTau2|chr8 (29643221-29642974)
               

               
               70-319, gnl|canFam2|chr11 (56223992-56224233)
               

               
               70-319, gnl|dasNov1|scaffold_88742 (1492-1233)
               

               
               70-319, gnl|echTel1|scaffold_318880 (5516-5284)
               

               
               70-319, gnl|hg17|chr9 (36824100-36824356)
               

               
               70-319, gnl|Hg17|chr9 (36824446-36824166)
               

               
               70-319, gnl|loxAfr1|scaffold_85363 (1814-2067)
               

               
               70-319, gnl|mm7|chr4 (44539383-44539639)
               

               
               70-319, gnl|Mm7|chr4 (44540087-44539452)
               

               
               70-319, gnl|monDom2|scaffold_19 (9168968-9169274)
               

               
               70-319, gnl|panTro1|chr11 (37436210-37436466)
               

               
               70-319, gnl|rheMac2|chr15 (40600396-40600139)
               

               
               70-319, gnl|rn3|chr5 (61010765-61011021)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	70-319, gnl\|bosTau2\|chr8 (29643221-29642974)
	70-319, gnl\|canFam2\|chr11 (56223992-56224233)
	70-319, gnl\|dasNov1\|scaffold_88742 (1492-1233)
	70-319, gnl\|echTel1\|scaffold_318880 (5516-5284)
	70-319, gnl\|hg17\|chr9 (36824100-36824356)
	70-319, gnl\|Hg17\|chr9 (36824446-36824166)
	70-319, gnl\|loxAfr1\|scaffold_85363 (1814-2067)
	70-319, gnl\|mm7\|chr4 (44539383-44539639)
	70-319, gnl\|Mm7\|chr4 (44540087-44539452)
	70-319, gnl\|monDom2\|scaffold_19 (9168968-9169274)
	70-319, gnl\|panTro1\|chr11 (37436210-37436466)
	70-319, gnl\|rheMac2\|chr15 (40600396-40600139)
	70-319, gnl\|rn3\|chr5 (61010765-61011021)