Non-Coding RNA Search

Ss1.1-rlnt14c_a13.5.5

Sequence:


               
               ATTCACCCAAAGACACAAGTCCAGGATAGTGCTCTCGCAAACATGGTGAACGTTCCTAAA
ACCCGCCGGACTTTCTGTAAGAAGTGCGGCAAGCACCAACCCCACAAAGTGACACAGTAC
AAGAAGGGCAAGGATTCACTGTATGCCCAGGGAAAGCGGCGTTATGACAGGAAGCAGAGT
GGCTATGGTGGGCAGACTAAACCAATTTTCCGGAAAAAGGCTAAAACTACAAAGAAGATT
GTGCTGAGGCTGGAATGCGTTGAGCCCAACTGCAGATCTAAGAGAATGCTGGCTATTAAG
AGATGCAAGCATTTTGAGCTGGGAGGAGATAAAAAGAGAAAGGGCCAAGTGATCCAGTTC
TGAGCTTCATACTTTTATTATGAAGACAATAAAATTTTGAGATTGTTTAAAAAAAAAAAA
AGTTGCTTTTTTGGAAGGGAAATAAACTACCATCAATAAAAGTATCCTTGGGAAATTTGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAGGGGAAAATGAACAACTGG
CTTTAAAGGATGGTGATCCCTTTTAGGAATAGACATGATTCCTACAAAATACAAAAATTC
ACCCTTTTATTTTTTCTGATCTGTTACAGGGCCAAGTGATCCAGTTCTGAGCTTCATACT
TTTATTATGAAGACAATAAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCACCCAAAGACACAAGTCCAGGATAGTGCTCTCGCAAACATGGTGAACGTTCCTAAA
ACCCGCCGGACTTTCTGTAAGAAGTGCGGCAAGCACCAACCCCACAAAGTGACACAGTAC
AAGAAGGGCAAGGATTCACTGTATGCCCAGGGAAAGCGGCGTTATGACAGGAAGCAGAGT
GGCTATGGTGGGCAGACTAAACCAATTTTCCGGAAAAAGGCTAAAACTACAAAGAAGATT
GTGCTGAGGCTGGAATGCGTTGAGCCCAACTGCAGATCTAAGAGAATGCTGGCTATTAAG
AGATGCAAGCATTTTGAGCTGGGAGGAGATAAAAAGAGAAAGGGCCAAGTGATCCAGTTC
TGAGCTTCATACTTTTATTATGAAGACAATAAAATTTTGAGATTGTTTAAAAAAAAAAAA
AGTTGCTTTTTTGGAAGGGAAATAAACTACCATCAATAAAAGTATCCTTGGGAAATTTGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAGGGGAAAATGAACAACTGG
CTTTAAAGGATGGTGATCCCTTTTAGGAATAGACATGATTCCTACAAAATACAAAAATTC
ACCCTTTTATTTTTTCTGATCTGTTACAGGGCCAAGTGATCCAGTTCTGAGCTTCATACT
TTTATTATGAAGACAATAAAATTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13592061|ref|NP_112367.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13592061|ref|NP_112367.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               31-461, gnl|bosTau2|chr2 (45147058-45146631)
               

               
               31-461, gnl|Hg17|chr11 (16953148-16952774)
               

               
               31-461, gnl|Mm7|chr14 (93394504-93394074)
               


               
               32-449, gnl|bosTau2|chr10 (12903273-12902869)
               

               
               32-449, gnl|Hg17|chr2 (69733852-69733468)
               

               
               32-449, gnl|Mm7|chr12 (29734228-29733816)
               


               
               37-367, gnl|bosTau2|chr10 (29975166-29974836)
               

               
               37-367, gnl|Hg17|chr14 (49155578-49155248)
               

               
               37-367, gnl|Mm7|chr12 (67124639-67124309)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-461, gnl|bosTau2|chr2 (45147058-45146631)
               

               
               31-461, gnl|Hg17|chr11 (16953148-16952774)
               

               
               31-461, gnl|Mm7|chr14 (93394504-93394074)
               


               
               32-449, gnl|bosTau2|chr10 (12903273-12902869)
               

               
               32-449, gnl|Hg17|chr2 (69733852-69733468)
               

               
               32-449, gnl|Mm7|chr12 (29734228-29733816)
               


               
               37-367, gnl|bosTau2|chr10 (29975166-29974836)
               

               
               37-367, gnl|Hg17|chr14 (49155578-49155248)
               

               
               37-367, gnl|Mm7|chr12 (67124639-67124309)

Expressed library(ies): 68 entry(ies)

More info

Expressed library(ies): 68 entry(ies)

Help | Less info


               
               cmu (9.50606)
               

               
               sto (6.29383)
               

               
               csk (3.3779)
               

               
               eje (2.47084)
               

               
               cut (2.20901)
               

               
               rec (1.7307)
               

               
               nms (1.49701)
               

               
               med (1.39502)
               

               
               nca (1.23186)
               

               
               lnt (1.13847)
               

               
               nep (1.10355)
               

               
               eep (1.10308)
               

               
               nbm (1.09257)
               

               
               eye (1.02302)
               

               
               pty (0.999001)
               

               
               aor (0.976372)
               

               
               sag (0.913576)
               

               
               cte (0.87822)
               

               
               mcp (0.853242)
               

               
               eru (0.840336)
               

               
               amn (0.835422)
               

               
               ebs (0.828108)
               

               
               fce (0.814775)
               

               
               jej (0.791374)
               

               
               elu (0.770713)
               

               
               eli (0.759071)
               

               
               mgp (0.692042)
               

               
               nje (0.66368)
               

               
               nco (0.646935)
               

               
               col (0.585023)
               

               
               ssp (0.542079)
               

               
               nmm (0.531209)
               

               
               fty (0.527519)
               

               
               ill (0.526778)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               ese (0.506009)
               

               
               fco (0.471624)
               

               
               ece (0.45861)
               

               
               che (0.408942)
               

               
               fli (0.405762)
               

               
               ova (0.387397)
               

               
               fbs (0.350693)
               

               
               ecc (0.345105)
               

               
               jca (0.34188)
               

               
               csp (0.322373)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cly (0.120642)

Expressed library(ies): 68 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (9.50606)
               

               
               sto (6.29383)
               

               
               csk (3.3779)
               

               
               eje (2.47084)
               

               
               cut (2.20901)
               

               
               rec (1.7307)
               

               
               nms (1.49701)
               

               
               med (1.39502)
               

               
               nca (1.23186)
               

               
               lnt (1.13847)
               

               
               nep (1.10355)
               

               
               eep (1.10308)
               

               
               nbm (1.09257)
               

               
               eye (1.02302)
               

               
               pty (0.999001)
               

               
               aor (0.976372)
               

               
               sag (0.913576)
               

               
               cte (0.87822)
               

               
               mcp (0.853242)
               

               
               eru (0.840336)
               

               
               amn (0.835422)
               

               
               ebs (0.828108)
               

               
               fce (0.814775)
               

               
               jej (0.791374)
               

               
               elu (0.770713)
               

               
               eli (0.759071)
               

               
               mgp (0.692042)
               

               
               nje (0.66368)
               

               
               nco (0.646935)
               

               
               col (0.585023)
               

               
               ssp (0.542079)
               

               
               nmm (0.531209)
               

               
               fty (0.527519)
               

               
               ill (0.526778)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               ese (0.506009)
               

               
               fco (0.471624)
               

               
               ece (0.45861)
               

               
               che (0.408942)
               

               
               fli (0.405762)
               

               
               ova (0.387397)
               

               
               fbs (0.350693)
               

               
               ecc (0.345105)
               

               
               jca (0.34188)
               

               
               csp (0.322373)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cly (0.120642)

	31-461, gnl\|bosTau2\|chr2 (45147058-45146631)
	31-461, gnl\|Hg17\|chr11 (16953148-16952774)
	31-461, gnl\|Mm7\|chr14 (93394504-93394074)

	32-449, gnl\|bosTau2\|chr10 (12903273-12902869)
	32-449, gnl\|Hg17\|chr2 (69733852-69733468)
	32-449, gnl\|Mm7\|chr12 (29734228-29733816)

	37-367, gnl\|bosTau2\|chr10 (29975166-29974836)
	37-367, gnl\|Hg17\|chr14 (49155578-49155248)
	37-367, gnl\|Mm7\|chr12 (67124639-67124309)

	cmu (9.50606)
	sto (6.29383)
	csk (3.3779)
	eje (2.47084)
	cut (2.20901)
	rec (1.7307)
	nms (1.49701)
	med (1.39502)
	nca (1.23186)
	lnt (1.13847)
	nep (1.10355)
	eep (1.10308)
	nbm (1.09257)
	eye (1.02302)
	pty (0.999001)
	aor (0.976372)
	sag (0.913576)
	cte (0.87822)
	mcp (0.853242)
	eru (0.840336)
	amn (0.835422)
	ebs (0.828108)
	fce (0.814775)
	jej (0.791374)
	elu (0.770713)
	eli (0.759071)
	mgp (0.692042)
	nje (0.66368)
	nco (0.646935)
	col (0.585023)
	ssp (0.542079)
	nmm (0.531209)
	fty (0.527519)
	ill (0.526778)
	ton (0.526501)
	pro (0.512033)
	ese (0.506009)
	fco (0.471624)
	ece (0.45861)
	che (0.408942)
	fli (0.405762)
	ova (0.387397)
	fbs (0.350693)
	ecc (0.345105)
	jca (0.34188)
	csp (0.322373)
	spl (0.286369)
	hyp (0.285673)
	cst (0.280073)
	hlv (0.278513)
	cbe (0.239234)
	pgl (0.236967)
	spc (0.226732)
	hea (0.204499)
	fcc (0.197785)
	nlu (0.191681)
	duo (0.172801)
	fhi (0.169578)
	cki (0.165235)
	bfe (0.149858)
	liv (0.146284)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	cly (0.120642)