Ss1.1-rlnt14c_h10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAGGTGCTGACCCCCGCAGCACCCTCGTCTCCCAGCAGCTCTGGAGCCTAGCCCAGCAG CTGGTGGACCCAGCCCGGCCAGGGGACTTTAACCAGGCAGCCATGGAGCTAGGGGCCACG GTGTGCACCCCCCAGCACCCACTCTGCAGCCAGTGCCCTGTGCAGAGCCTCTGCCGGGCG CACCAGAGGGTGGAGCGGGAGCAGCTTTCAGCCTCCCAGAGCTTACCGGGCACTTGTGAC ATAGAGGCGTGTGCTCCCAACACCGGACAGTGCCAGCTCTGCGCACCTCCCACGGAGCCC TGGGACAAGACCCTGGGAGTGGCCAACTTTCCCAGAAAGGCCAATCGCAAGCCCCCCAGG GAAGAGAGCTCTGCCATCTGTGTTTTGGAGCAGCCCAGGGCCTTTGGAGGTGCCCGACTT CTGCTGGTACAGAGGCCCAACTCAGGTCTGCTGGCAGGACTGTGGGAGTTCCCGTCCGTG GCCGCAGAGCCCTCAGAGCAGCTCCAGTGCACGGCTCTGCTGCAGGAACTGCAGAATTGG GTCGGACCCCTCCCGGCCACCCGCCTCCAGCACCTGGGGGAGGTGGTCCACAGCTTCTCT CACATCAAGCTGACTTACCACGTGTACGGCCTGGCCCTGGACGAACAGACCCCGGTGACG GTCCTACCCGCCGACGCTCGCTGGCTCACCCGGGAGGAGTTTCACGCCGCAGCGGTCTCC ACAGCCATGAAAAAGGTGTTCCGTGTGTATGAGGGCCAACGGCCAGGGACCTGCAAGGCT TCCAAAAAATCCCAGGTGTCCACCCTGTCCAGACGGAAAAAGCCCAGCCCAGGCCAGCAA GTCCTGGATAATTTCCTGCGGCCCCCCATCCCCGCTGATGCACCCAGCCTCGACAGTACA GCCCAGTGATGCCTCTGTTAGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAGGTGCTGACCCCCGCAGCACCCTCGTCTCCCAGCAGCTCTGGAGCCTAGCCCAGCAG CTGGTGGACCCAGCCCGGCCAGGGGACTTTAACCAGGCAGCCATGGAGCTAGGGGCCACG GTGTGCACCCCCCAGCACCCACTCTGCAGCCAGTGCCCTGTGCAGAGCCTCTGCCGGGCG CACCAGAGGGTGGAGCGGGAGCAGCTTTCAGCCTCCCAGAGCTTACCGGGCACTTGTGAC ATAGAGGCGTGTGCTCCCAACACCGGACAGTGCCAGCTCTGCGCACCTCCCACGGAGCCC TGGGACAAGACCCTGGGAGTGGCCAACTTTCCCAGAAAGGCCAATCGCAAGCCCCCCAGG GAAGAGAGCTCTGCCATCTGTGTTTTGGAGCAGCCCAGGGCCTTTGGAGGTGCCCGACTT CTGCTGGTACAGAGGCCCAACTCAGGTCTGCTGGCAGGACTGTGGGAGTTCCCGTCCGTG GCCGCAGAGCCCTCAGAGCAGCTCCAGTGCACGGCTCTGCTGCAGGAACTGCAGAATTGG GTCGGACCCCTCCCGGCCACCCGCCTCCAGCACCTGGGGGAGGTGGTCCACAGCTTCTCT CACATCAAGCTGACTTACCACGTGTACGGCCTGGCCCTGGACGAACAGACCCCGGTGACG GTCCTACCCGCCGACGCTCGCTGGCTCACCCGGGAGGAGTTTCACGCCGCAGCGGTCTCC ACAGCCATGAAAAAGGTGTTCCGTGTGTATGAGGGCCAACGGCCAGGGACCTGCAAGGCT TCCAAAAAATCCCAGGTGTCCACCCTGTCCAGACGGAAAAAGCCCAGCCCAGGCCAGCAA GTCCTGGATAATTTCCTGCGGCCCCCCATCCCCGCTGATGCACCCAGCCTCGACAGTACA GCCCAGTGATGCCTCTGTTAGTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 330-447, - strand, RNAz p=0.677237 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 330-447, - strand, RNAz p=0.677237 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 44-192, gnl|bosTau2|chr3 (70454392-70454540) | |
| 44-192, gnl|canFam2|chr15 (18029624-18029460) | |
| 44-192, gnl|danRer3|chr15 (16907339-16907503) | |
| 44-192, gnl|dasNov1|scaffold_13524 (37051-36884) | |
| 44-192, gnl|echTel1|scaffold_311598 (11898-12065) | |
| 44-192, gnl|fr1|chrUn (195946547-195946377) | |
| 44-192, gnl|galGal2|chr8 (21284806-21284998) | |
| 44-192, gnl|hg17|chr1 (45466917-45467084) | |
| 44-192, gnl|Hg17|chr1 (45467076-45466928) | |
| 44-192, gnl|loxAfr1|scaffold_8559 (72140-72320) | |
| 44-192, gnl|mm7|chr4 (116193554-116193387) | |
| 44-192, gnl|Mm7|chr4 (116193393-116193541) | |
| 44-192, gnl|monDom2|scaffold_70 (7729712-7729546) | |
| 44-192, gnl|oryCun1|scaffold_209879 (80339-80172) | |
| 44-192, gnl|panTro1|chr1_random (65210611-65210444) | |
| 44-192, gnl|rheMac2|chr1 (48247690-48247857) | |
| 44-192, gnl|rn3|chr5 (137118887-137118720) | |
| 44-192, gnl|tetNig1|chr1 (9880628-9880786) | |
| 44-192, gnl|xenTro1|scaffold_1 (7569897-7570069) | |
| 253-447, gnl|bosTau2|chr3 (70454861-70455055) | |
| 253-447, gnl|Hg17|chr1 (45466615-45466424) | |
| 253-447, gnl|Mm7|chr4 (116193822-116194016) | |
| 581-736, gnl|bosTau2|chr3 (70455382-70455537) | |
| 581-736, gnl|Hg17|chr1 (45466101-45465946) | |
| 581-736, gnl|Mm7|chr4 (116194325-116194477) | |
| 771-917, gnl|bosTau2|chr3 (70456462-70456609) | |
| 771-917, gnl|Hg17|chr1 (45464210-45464063) | |
| 771-917, gnl|Mm7|chr4 (116195686-116195824) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-192, gnl|bosTau2|chr3 (70454392-70454540) | |
| 44-192, gnl|canFam2|chr15 (18029624-18029460) | |
| 44-192, gnl|danRer3|chr15 (16907339-16907503) | |
| 44-192, gnl|dasNov1|scaffold_13524 (37051-36884) | |
| 44-192, gnl|echTel1|scaffold_311598 (11898-12065) | |
| 44-192, gnl|fr1|chrUn (195946547-195946377) | |
| 44-192, gnl|galGal2|chr8 (21284806-21284998) | |
| 44-192, gnl|hg17|chr1 (45466917-45467084) | |
| 44-192, gnl|Hg17|chr1 (45467076-45466928) | |
| 44-192, gnl|loxAfr1|scaffold_8559 (72140-72320) | |
| 44-192, gnl|mm7|chr4 (116193554-116193387) | |
| 44-192, gnl|Mm7|chr4 (116193393-116193541) | |
| 44-192, gnl|monDom2|scaffold_70 (7729712-7729546) | |
| 44-192, gnl|oryCun1|scaffold_209879 (80339-80172) | |
| 44-192, gnl|panTro1|chr1_random (65210611-65210444) | |
| 44-192, gnl|rheMac2|chr1 (48247690-48247857) | |
| 44-192, gnl|rn3|chr5 (137118887-137118720) | |
| 44-192, gnl|tetNig1|chr1 (9880628-9880786) | |
| 44-192, gnl|xenTro1|scaffold_1 (7569897-7570069) | |
| 253-447, gnl|bosTau2|chr3 (70454861-70455055) | |
| 253-447, gnl|Hg17|chr1 (45466615-45466424) | |
| 253-447, gnl|Mm7|chr4 (116193822-116194016) | |
| 581-736, gnl|bosTau2|chr3 (70455382-70455537) | |
| 581-736, gnl|Hg17|chr1 (45466101-45465946) | |
| 581-736, gnl|Mm7|chr4 (116194325-116194477) | |
| 771-917, gnl|bosTau2|chr3 (70456462-70456609) | |
| 771-917, gnl|Hg17|chr1 (45464210-45464063) | |
| 771-917, gnl|Mm7|chr4 (116195686-116195824) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| ill (0.175593) | |
| lnt (0.142308) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| ill (0.175593) | |
| lnt (0.142308) | |
| med (0.116252) |