Non-Coding RNA Search

Ss1.1-rlnt15c_n2.5

Sequence:


               
               GAGCTTCCTTCGGACCTTCTCCCCCGCCCCCCGCTTCCCCTCGCCCCTCCACCACCCCCC
CTCAGGCTGGGTGAGTGTCTCTGCATGTTTCGTTGGCTGTGGTGGGAGATTGTTTGACGG
AAGCCTGCCCCCCACTTTGATCTCCAGGCGTGTGGAATGGTGGGGGCATTTGTTTAAAAA
GACATTTTATTATAATAAAGTCTATTCTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTTCCTTCGGACCTTCTCCCCCGCCCCCCGCTTCCCCTCGCCCCTCCACCACCCCCC
CTCAGGCTGGGTGAGTGTCTCTGCATGTTTCGTTGGCTGTGGTGGGAGATTGTTTGACGG
AAGCCTGCCCCCCACTTTGATCTCCAGGCGTGTGGAATGGTGGGGGCATTTGTTTAAAAA
GACATTTTATTATAATAAAGTCTATTCTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               98-215, + strand, RNAz p=0.917995

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               98-215, + strand, RNAz p=0.917995

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB014512, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB014512, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               61-215, gnl|bosTau2|chr19 (2737837-2737687)
               

               
               61-215, gnl|canFam2|chr9 (36273248-36274025)
               

               
               61-215, gnl|dasNov1|scaffold_1630 (2536-3323)
               

               
               61-215, gnl|echTel1|scaffold_323737 (161040-161811)
               

               
               61-215, gnl|hg17|chr17 (53733481-53734302)
               

               
               61-215, gnl|Hg17|chr17 (53733746-53733591)
               

               
               61-215, gnl|mm7|chr11 (87855951-87855110)
               

               
               61-215, gnl|Mm7|chr11 (87855678-87855832)
               

               
               61-215, gnl|monDom2|scaffold_56 (4747498-4746549)
               

               
               61-215, gnl|panTro1|chr19_random (39470976-39471798)
               

               
               61-215, gnl|rheMac2|chr16 (42544120-42544943)
               

               
               61-215, gnl|rn3|chr10 (76092297-76091528)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-215, gnl|bosTau2|chr19 (2737837-2737687)
               

               
               61-215, gnl|canFam2|chr9 (36273248-36274025)
               

               
               61-215, gnl|dasNov1|scaffold_1630 (2536-3323)
               

               
               61-215, gnl|echTel1|scaffold_323737 (161040-161811)
               

               
               61-215, gnl|hg17|chr17 (53733481-53734302)
               

               
               61-215, gnl|Hg17|chr17 (53733746-53733591)
               

               
               61-215, gnl|mm7|chr11 (87855951-87855110)
               

               
               61-215, gnl|Mm7|chr11 (87855678-87855832)
               

               
               61-215, gnl|monDom2|scaffold_56 (4747498-4746549)
               

               
               61-215, gnl|panTro1|chr19_random (39470976-39471798)
               

               
               61-215, gnl|rheMac2|chr16 (42544120-42544943)
               

               
               61-215, gnl|rn3|chr10 (76092297-76091528)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	61-215, gnl\|bosTau2\|chr19 (2737837-2737687)
	61-215, gnl\|canFam2\|chr9 (36273248-36274025)
	61-215, gnl\|dasNov1\|scaffold_1630 (2536-3323)
	61-215, gnl\|echTel1\|scaffold_323737 (161040-161811)
	61-215, gnl\|hg17\|chr17 (53733481-53734302)
	61-215, gnl\|Hg17\|chr17 (53733746-53733591)
	61-215, gnl\|mm7\|chr11 (87855951-87855110)
	61-215, gnl\|Mm7\|chr11 (87855678-87855832)
	61-215, gnl\|monDom2\|scaffold_56 (4747498-4746549)
	61-215, gnl\|panTro1\|chr19_random (39470976-39471798)
	61-215, gnl\|rheMac2\|chr16 (42544120-42544943)
	61-215, gnl\|rn3\|chr10 (76092297-76091528)