Non-Coding RNA Search

Ss1.1-rlnt18c_b6.5.5

Sequence:


               
               TTCAATGTAATGGGATTTCCTGCAGATAAAGATTGGGAAGATATAAAAAAGATGCCTGAA
CATTCAACATTAATGAAAGACTTCAGAAGAAATACGTATACCAACTGCAGCCTTATCAAG
TATATGGAAAAACATAAAGTTAAACCAGATAGTAAAGCATTCCACTTGCTTCAGAAATTG
CTTACCATGGACCCAATAAAGCGAATTACCTCAGAACAGGCTATGCAGGATCCCTATTTC
TTAGAAGACCCACTTCCTACATCAGACGTTTTTGCCGGTTGTCAGATCCCGTACCCTAAA
AGAGAGTTTTTAACGGAGGAAGAGCCCGAGGACAAAGGAGACAAAAACCAGCAGCAGCAG
CAGGGCAATAACCACACTAATGGGACTGGCCACCCCGGGAACCAGGACAGCAGCCACACG
CAGGGCCCCCCGTTGAAGAAAGTGCGGGTTGTTCCTCCTACCACTACCTCAGGCGGACTC
ATCATGACCTCAGACTATCAGCGTTCCAATCCCCATGCTGCCTACCCCAACCCCGGACCA
AGCACATCGCAGCCGCAGAGCAGCATGGGGTACTCAACTACCTCCCAGCAGCCTCCCCAG
TACTCCCATCAGACACACCGGTACTGAGCTGCGCCGGACACTGTCCATGCACTGTCGCTG
CGCCGCCGCGGGCCTGCCGCCGCCCCCGCGGAGCCCGGGATGGGCCCTGAGAATGTACTG
TGCAGCCACGGCGTCAGATGTCCAGCAGCCAAGTCCCGCCGCTTTTCACAGATTGGGGTA
GTGGCTTCCAGGTGGTTCCTGTTTGGCGTTAGACTCGAGAAGAAAGTCCGAGCACAGTTT
GTGTTGTGGGTTTGCTACTTCCCTGGTTTACTTGACGTGGTTCGCACTGACCAATGCATT
TTTTCAGTGACAGTCTGTAGCAGTCGAAGCTGTGAAGTGTGCTGGGGCAAGCCTTTGTCG
TTGAGTGTGGTGAGTTCTTCCAGCGTAGCAACATGATCTGACCAACAGTACACACACCCC
CCACACGCAAAAGTTTAACTGGTACTTGAAACAGACAGCCTGTGTTAACCCGACAGAGTA
GCAACCAAGACCCAAAAGGAGACTCTTTCGGTACAGTTTTCATTTCAGTGTCTTAGCAGT
GGGCCGACGCATTTTCTACATTAATCAGTGTTTCTGACCAAGACCATCGCTTGGATTTTT
TGAAAGTATAAAAGCCACATAGTTTCTCCAGAAGGTTTCAAAACTCCCAAAGATTGATTT
CCAACTTCTAAGTTTGTTTTTGTTTTCAATCTATGACTTGACTGGTATTAAAGCTGCTAT
TTGATCGTAATGAAATATGTTGTCATTGATATAAACCTGTTTGGTTCAGCAAACAAACTA
AGATGATTGTCATAGACAGTGTTTTATTTTTCCTGTTGGTGTTGCAGATTTGTGAGCATG
CTTTAAGAAGACAAAAGCATGAGTGATAACTTCCTTAAAAAGGTGCGGCATCCAATTGAG
ATATTTTGTCCTGATTTTAAAGCTGGTTGGTGTAGTACTACTAAAATTTTGTTCAGTTCA
TTTTCTTTTTTAAAACTTGTTCGCACGGTGTTTAGGGTGCCCTTACTTCAGCCAAGGAGA
AGGAGTAGGAGAGCCTTAGAATTTTTGAGGAAAAAAAAAAAAAACCTATAACATACAATG
TACTGTATCAAACTATTTTACATGAATGACACAAGTATTCTGAATTTAAAAAAAAATTGA
ACATTGTTAAAAACAAGGTGTTATTGTAATAAATTTTTTTTCATAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAATGTAATGGGATTTCCTGCAGATAAAGATTGGGAAGATATAAAAAAGATGCCTGAA
CATTCAACATTAATGAAAGACTTCAGAAGAAATACGTATACCAACTGCAGCCTTATCAAG
TATATGGAAAAACATAAAGTTAAACCAGATAGTAAAGCATTCCACTTGCTTCAGAAATTG
CTTACCATGGACCCAATAAAGCGAATTACCTCAGAACAGGCTATGCAGGATCCCTATTTC
TTAGAAGACCCACTTCCTACATCAGACGTTTTTGCCGGTTGTCAGATCCCGTACCCTAAA
AGAGAGTTTTTAACGGAGGAAGAGCCCGAGGACAAAGGAGACAAAAACCAGCAGCAGCAG
CAGGGCAATAACCACACTAATGGGACTGGCCACCCCGGGAACCAGGACAGCAGCCACACG
CAGGGCCCCCCGTTGAAGAAAGTGCGGGTTGTTCCTCCTACCACTACCTCAGGCGGACTC
ATCATGACCTCAGACTATCAGCGTTCCAATCCCCATGCTGCCTACCCCAACCCCGGACCA
AGCACATCGCAGCCGCAGAGCAGCATGGGGTACTCAACTACCTCCCAGCAGCCTCCCCAG
TACTCCCATCAGACACACCGGTACTGAGCTGCGCCGGACACTGTCCATGCACTGTCGCTG
CGCCGCCGCGGGCCTGCCGCCGCCCCCGCGGAGCCCGGGATGGGCCCTGAGAATGTACTG
TGCAGCCACGGCGTCAGATGTCCAGCAGCCAAGTCCCGCCGCTTTTCACAGATTGGGGTA
GTGGCTTCCAGGTGGTTCCTGTTTGGCGTTAGACTCGAGAAGAAAGTCCGAGCACAGTTT
GTGTTGTGGGTTTGCTACTTCCCTGGTTTACTTGACGTGGTTCGCACTGACCAATGCATT
TTTTCAGTGACAGTCTGTAGCAGTCGAAGCTGTGAAGTGTGCTGGGGCAAGCCTTTGTCG
TTGAGTGTGGTGAGTTCTTCCAGCGTAGCAACATGATCTGACCAACAGTACACACACCCC
CCACACGCAAAAGTTTAACTGGTACTTGAAACAGACAGCCTGTGTTAACCCGACAGAGTA
GCAACCAAGACCCAAAAGGAGACTCTTTCGGTACAGTTTTCATTTCAGTGTCTTAGCAGT
GGGCCGACGCATTTTCTACATTAATCAGTGTTTCTGACCAAGACCATCGCTTGGATTTTT
TGAAAGTATAAAAGCCACATAGTTTCTCCAGAAGGTTTCAAAACTCCCAAAGATTGATTT
CCAACTTCTAAGTTTGTTTTTGTTTTCAATCTATGACTTGACTGGTATTAAAGCTGCTAT
TTGATCGTAATGAAATATGTTGTCATTGATATAAACCTGTTTGGTTCAGCAAACAAACTA
AGATGATTGTCATAGACAGTGTTTTATTTTTCCTGTTGGTGTTGCAGATTTGTGAGCATG
CTTTAAGAAGACAAAAGCATGAGTGATAACTTCCTTAAAAAGGTGCGGCATCCAATTGAG
ATATTTTGTCCTGATTTTAAAGCTGGTTGGTGTAGTACTACTAAAATTTTGTTCAGTTCA
TTTTCTTTTTTAAAACTTGTTCGCACGGTGTTTAGGGTGCCCTTACTTCAGCCAAGGAGA
AGGAGTAGGAGAGCCTTAGAATTTTTGAGGAAAAAAAAAAAAAACCTATAACATACAATG
TACTGTATCAAACTATTTTACATGAATGACACAAGTATTCTGAATTTAAAAAAAAATTGA
ACATTGTTAAAAACAAGGTGTTATTGTAATAAATTTTTTTTCATAAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9GKR8_MACFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9GKR8_MACFA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               499-656, - strand, RNAz p=0.789764
               

               
               1358-1477, - strand, RNAz p=0.784515

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               499-656, - strand, RNAz p=0.789764
               

               
               1358-1477, - strand, RNAz p=0.784515

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               499-1786, gnl|bosTau2|chr12 (16683242-16681969)
               

               
               499-1786, gnl|Hg17|chr13 (25876090-25877368)
               

               
               499-1786, gnl|Mm7|chr5 (145189862-145191158)
               


               
               1224-1599, gnl|bosTau2|chr10 (11748828-11748456)
               

               
               1224-1599, gnl|Hg17|chr15 (68248222-68247546)
               

               
               1224-1599, gnl|Mm7|chr9 (61339735-61340098)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               499-1786, gnl|bosTau2|chr12 (16683242-16681969)
               

               
               499-1786, gnl|Hg17|chr13 (25876090-25877368)
               

               
               499-1786, gnl|Mm7|chr5 (145189862-145191158)
               


               
               1224-1599, gnl|bosTau2|chr10 (11748828-11748456)
               

               
               1224-1599, gnl|Hg17|chr15 (68248222-68247546)
               

               
               1224-1599, gnl|Mm7|chr9 (61339735-61340098)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cbe (0.478469)
               

               
               gul (0.355177)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               gul (0.355177)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	499-656, - strand, RNAz p=0.789764
	1358-1477, - strand, RNAz p=0.784515

	499-1786, gnl\|bosTau2\|chr12 (16683242-16681969)
	499-1786, gnl\|Hg17\|chr13 (25876090-25877368)
	499-1786, gnl\|Mm7\|chr5 (145189862-145191158)

	1224-1599, gnl\|bosTau2\|chr10 (11748828-11748456)
	1224-1599, gnl\|Hg17\|chr15 (68248222-68247546)
	1224-1599, gnl\|Mm7\|chr9 (61339735-61340098)

	cbe (0.478469)
	gul (0.355177)
	cte (0.29274)
	lin (0.291206)
	mgp (0.230681)
	cmu (0.186393)
	mgm (0.180343)
	liv (0.146284)
	spl (0.143184)
	lnt (0.142308)
	ute (0.132784)
	eje (0.0988338)
	ldo (0.0970026)