Non-Coding RNA Search

Ss1.1-rlnt19c_j2.5

Sequence:


               
               AAGGGGAAAAACATACTGTTCCACTTGCTGCCGTTTCTGATGCGTTATCCCAGCCTATGT
TTTGAGCTCAGAACCGTCTGAGCAGGGCATCAGCTTTGCCGCAGAGCCGTTCCAGAACCA
TTCCAAGTAATACCGGCTGATCCTCTCTGTCCCAGTGGACCTCCTCCCCCGCTTGTGGGT
GCCTGAGAATGATTCTGGAATGGTTCTGTTCTTGGGTCTGTGAAAGCTTATCTAGCAGAG
GAGCGAACACCCAGAAAAATGTTTATAAAGCACATGTACTCGTTCTGTTTGGAGACTTGC
CCGGCTGTTCCAGTTGAAAACATGAAAAATAAACTGAGTTGCCAAGCAAAAATATAATGC
ACAATGTAATTCTGATTTTCCGTGCAGTATAGCGTTAAGCTTTTTTTTTACTTGAAATAA
CCAAAGAACTCCTCCTTGATGAGACAGTTCGCTTTCCTGAATTAGTATTTCTTCACAATA
TCAACTGAAAGAATTGACTTCATAGTAAAATATTGCACTTATTTTTTTCCTGAAATAATT
CTGCCTGCATGTATGTGTTGTGTTTTAGTGTTCCCTCATTTCTCCCCACCCCAAAGAACT
TTTCTTCCCAATGGTTTATGTCTTCAACATGGTAACTGTTTATCAGATGGTTTTTCATTA
GTGAATTTAGACCTCTTTGAGAAAGCTTGTATATAAAAGGTTAACAGATATATTTTATGG
AAAAACCCATCTTATTTTCAAATATATTTAACTGCTGTTCTATTTTATTAGAGGAAGGTT
GTAAATATTTTCTAGGAGTTCTATTGTAAAGAAAAGTATTTTTGAAAAAAATTAATGTAA
TAAAAACGAAAACCTTTTTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGGAAAAACATACTGTTCCACTTGCTGCCGTTTCTGATGCGTTATCCCAGCCTATGT
TTTGAGCTCAGAACCGTCTGAGCAGGGCATCAGCTTTGCCGCAGAGCCGTTCCAGAACCA
TTCCAAGTAATACCGGCTGATCCTCTCTGTCCCAGTGGACCTCCTCCCCCGCTTGTGGGT
GCCTGAGAATGATTCTGGAATGGTTCTGTTCTTGGGTCTGTGAAAGCTTATCTAGCAGAG
GAGCGAACACCCAGAAAAATGTTTATAAAGCACATGTACTCGTTCTGTTTGGAGACTTGC
CCGGCTGTTCCAGTTGAAAACATGAAAAATAAACTGAGTTGCCAAGCAAAAATATAATGC
ACAATGTAATTCTGATTTTCCGTGCAGTATAGCGTTAAGCTTTTTTTTTACTTGAAATAA
CCAAAGAACTCCTCCTTGATGAGACAGTTCGCTTTCCTGAATTAGTATTTCTTCACAATA
TCAACTGAAAGAATTGACTTCATAGTAAAATATTGCACTTATTTTTTTCCTGAAATAATT
CTGCCTGCATGTATGTGTTGTGTTTTAGTGTTCCCTCATTTCTCCCCACCCCAAAGAACT
TTTCTTCCCAATGGTTTATGTCTTCAACATGGTAACTGTTTATCAGATGGTTTTTCATTA
GTGAATTTAGACCTCTTTGAGAAAGCTTGTATATAAAAGGTTAACAGATATATTTTATGG
AAAAACCCATCTTATTTTCAAATATATTTAACTGCTGTTCTATTTTATTAGAGGAAGGTT
GTAAATATTTTCTAGGAGTTCTATTGTAAAGAAAAGTATTTTTGAAAAAAATTAATGTAA
TAAAAACGAAAACCTTTTTAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-862, gnl|bosTau2|chr23 (16923711-16924565)
               

               
               4-862, gnl|Hg17|chr6 (42302270-42301413)
               

               
               4-862, gnl|Mm7|chr17 (45497212-45498012)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-862, gnl|bosTau2|chr23 (16923711-16924565)
               

               
               4-862, gnl|Hg17|chr6 (42302270-42301413)
               

               
               4-862, gnl|Mm7|chr17 (45497212-45498012)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               mgp (0.230681)
               

               
               lnt (0.142308)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               lnt (0.142308)
               

               
               pgl (0.118483)

	4-862, gnl\|bosTau2\|chr23 (16923711-16924565)
	4-862, gnl\|Hg17\|chr6 (42302270-42301413)
	4-862, gnl\|Mm7\|chr17 (45497212-45498012)