Non-Coding RNA Search

Ss1.1-rlnt21c_o20.5

Sequence:


               
               CCGCCCCCGGCCGAGGGCGCTTAGGCCCCGCCCTCAGGCCCCACCCTACCCGGAACCCAG
GCTGCAGGTTCCCAGAGTACAGACTGTACCCAGCGCCCGAACCGAGGGCTTTGCCCAGTG
GTTGGAATGTAGAGCCCATCCCCCAGGATCCCAGCTGGCCATTTGAAACCTTACCCTGAG
CCCTTCACCAGTCTTTAAAGATCTAACCGCGGGAAACTCGGGCTCCACCTCAGAACCGAG
GCTCTAGCCTTCGGCCTGACCAGTGTTGGCTCAGGGTTGCTTCCAGCCCCTAGGGCCGAG
GTTTCATCCTAAACCCTAGAAGCACAGGTCCGGGAACCAAGGACCCCGCTCAGCCCCTTA
GAGTACATTTCCGCACTTCGGAATTCCATCCTTTGGGAATCCAACCCCCCTACAGCCAAA
AAGCCTAAGCAACGCTTCCAGAATTTGGAAATCATAGCTTCCTCCCTTCTCTATCCCATG
AGTCCGGGACACGAAACGCTCCTGGCCTGTGTGAATCCTGAGCCCCGCCCCCTTCCTGAC
CAAACTGGCCCCAGATCAGAGCAGACCTCTCATCCGACCCTTTGGGAACCTCCCCGAGGT
CCAGCCCGTCTCGGGGGACCCCGAGGAAATCTGCACGGGTTTGCAAATGGGTGAAGGGAG
CCTGATCTCTTCCTGTTTTGTACATAGATTTATTTTTCAGTTGCGAGGAAGATGAATACA
TTTTGTAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG
GGGGGGGGGCTTTTAAAAATTTCCCGGGGGGGGCCCAATTTTACCCCCCCCCTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCCCCGGCCGAGGGCGCTTAGGCCCCGCCCTCAGGCCCCACCCTACCCGGAACCCAG
GCTGCAGGTTCCCAGAGTACAGACTGTACCCAGCGCCCGAACCGAGGGCTTTGCCCAGTG
GTTGGAATGTAGAGCCCATCCCCCAGGATCCCAGCTGGCCATTTGAAACCTTACCCTGAG
CCCTTCACCAGTCTTTAAAGATCTAACCGCGGGAAACTCGGGCTCCACCTCAGAACCGAG
GCTCTAGCCTTCGGCCTGACCAGTGTTGGCTCAGGGTTGCTTCCAGCCCCTAGGGCCGAG
GTTTCATCCTAAACCCTAGAAGCACAGGTCCGGGAACCAAGGACCCCGCTCAGCCCCTTA
GAGTACATTTCCGCACTTCGGAATTCCATCCTTTGGGAATCCAACCCCCCTACAGCCAAA
AAGCCTAAGCAACGCTTCCAGAATTTGGAAATCATAGCTTCCTCCCTTCTCTATCCCATG
AGTCCGGGACACGAAACGCTCCTGGCCTGTGTGAATCCTGAGCCCCGCCCCCTTCCTGAC
CAAACTGGCCCCAGATCAGAGCAGACCTCTCATCCGACCCTTTGGGAACCTCCCCGAGGT
CCAGCCCGTCTCGGGGGACCCCGAGGAAATCTGCACGGGTTTGCAAATGGGTGAAGGGAG
CCTGATCTCTTCCTGTTTTGTACATAGATTTATTTTTCAGTTGCGAGGAAGATGAATACA
TTTTGTAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG
GGGGGGGGGCTTTTAAAAATTTCCCGGGGGGGGCCCAATTTTACCCCCCCCCTTTTTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               519-672, - strand, RNAz p=0.864534

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               519-672, - strand, RNAz p=0.864534

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-743, gnl|bosTau2|chr29 (33953528-33952782)
               

               
               5-743, gnl|Hg17|chr11 (64328324-64327557)
               

               
               5-743, gnl|Mm7|chr19 (6235032-6235701)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-743, gnl|bosTau2|chr29 (33953528-33952782)
               

               
               5-743, gnl|Hg17|chr11 (64328324-64327557)
               

               
               5-743, gnl|Mm7|chr19 (6235032-6235701)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               col (0.195008)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ecc (0.115035)

	5-743, gnl\|bosTau2\|chr29 (33953528-33952782)
	5-743, gnl\|Hg17\|chr11 (64328324-64327557)
	5-743, gnl\|Mm7\|chr19 (6235032-6235701)

	col (0.195008)
	ill (0.175593)
	duo (0.172801)
	nco (0.161734)
	cag (0.151194)
	lnt (0.142308)
	nca (0.136874)
	ecc (0.115035)