Ss1.1-rlnt22c_f10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCCTTCCATTCTGCAGGAGTTTTAGCTATTTGAAATGGTGGACCATCAATTTGGCACT TTAAGAGTGATTCTGACTCAAATCCTCTGTTTTATCAGCAATTTGGGTTTTCTTGCTCTT AGCTGGAAAAATGACCATCTGCCAACTCTATACAGTATTTGTTTTTGACCCACGGAATAT AGCACATGCATTGTGCAAATGGTTGATTCAGCAAGACTACAAAAAAAAAAAAAAAAAAAA AAAAAAGGNCAAAAAACTATTGGGGAGCTTNGAAACTGCTGTTTCCGG------------ ATCTTCCAAGCACATCTAGGGCNGGCNAGTTCCAATTGGCATGTGGAAGGCTGCCCNGGG ACNGAGAATTTTCAACCAGCTTACACCTTCNGGAAAACGTTTGTGATGGANTTTAGGGCT GCCGGAATTGGNACCAGAACGAGNGCGTATTTAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCCTTCCATTCTGCAGGAGTTTTAGCTATTTGAAATGGTGGACCATCAATTTGGCACT TTAAGAGTGATTCTGACTCAAATCCTCTGTTTTATCAGCAATTTGGGTTTTCTTGCTCTT AGCTGGAAAAATGACCATCTGCCAACTCTATACAGTATTTGTTTTTGACCCACGGAATAT AGCACATGCATTGTGCAAATGGTTGATTCAGCAAGACTACAAAAAAAAAAAAAAAAAAAA AAAAAAGGNCAAAAAACTATTGGGGAGCTTNGAAACTGCTGTTTCCGG------------ ATCTTCCAAGCACATCTAGGGCNGGCNAGTTCCAATTGGCATGTGGAAGGCTGCCCNGGG ACNGAGAATTTTCAACCAGCTTACACCTTCNGGAAAACGTTTGTGATGGANTTTAGGGCT GCCGGAATTGGNACCAGAACGAGNGCGTATTTAGAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 163-254, - strand, RNAz p=0.727405 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 163-254, - strand, RNAz p=0.727405 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-423, gnl|bosTau2|chr27 (12700356-12700795) | |
| 1-423, gnl|canFam2|chr16 (43513219-43512847) | |
| 1-423, gnl|canFam2|chr16 (43513219-43512847) | |
| 1-423, gnl|dasNov1|scaffold_11608 (11789-12156) | |
| 1-423, gnl|dasNov1|scaffold_11608 (11789-12156) | |
| 1-423, gnl|echTel1|scaffold_325279 (61332-60978) | |
| 1-423, gnl|echTel1|scaffold_325279 (61332-60978) | |
| 1-423, gnl|galGal2|chr4 (63664367-63664731) | |
| 1-423, gnl|galGal2|chr4 (63664367-63664731) | |
| 1-423, gnl|hg17|chr1 (115820368-115820728) | |
| 1-423, gnl|hg17|chr1_random (3259418-3259778) | |
| 1-423, gnl|Hg17|chr8 (17132229-17131812) | |
| 1-423, gnl|mm7|chr8 (39284257-39283905) | |
| 1-423, gnl|mm7|chr8 (39284257-39283905) | |
| 1-423, gnl|Mm7|chr8 (39284182-39283761) | |
| 1-423, gnl|monDom2|scaffold_36 (21313121-21312750) | |
| 1-423, gnl|monDom2|scaffold_36 (21313121-21312750) | |
| 1-423, gnl|oryCun1|scaffold_116774 (5310-5668) | |
| 1-423, gnl|oryCun1|scaffold_116774 (5310-5668) | |
| 1-423, gnl|panTro1|chr1 (115628177-115628537) | |
| 1-423, gnl|panTro1|chr1 (115628177-115628537) | |
| 1-423, gnl|rheMac2|chr1 (118542618-118542981) | |
| 1-423, gnl|rheMac2|chr1 (118542618-118542981) | |
| 1-423, gnl|rn3|chr16 (55136617-55136970) | |
| 1-423, gnl|rn3|chr16 (55136617-55136970) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-423, gnl|bosTau2|chr27 (12700356-12700795) | |
| 1-423, gnl|canFam2|chr16 (43513219-43512847) | |
| 1-423, gnl|canFam2|chr16 (43513219-43512847) | |
| 1-423, gnl|dasNov1|scaffold_11608 (11789-12156) | |
| 1-423, gnl|dasNov1|scaffold_11608 (11789-12156) | |
| 1-423, gnl|echTel1|scaffold_325279 (61332-60978) | |
| 1-423, gnl|echTel1|scaffold_325279 (61332-60978) | |
| 1-423, gnl|galGal2|chr4 (63664367-63664731) | |
| 1-423, gnl|galGal2|chr4 (63664367-63664731) | |
| 1-423, gnl|hg17|chr1 (115820368-115820728) | |
| 1-423, gnl|hg17|chr1_random (3259418-3259778) | |
| 1-423, gnl|Hg17|chr8 (17132229-17131812) | |
| 1-423, gnl|mm7|chr8 (39284257-39283905) | |
| 1-423, gnl|mm7|chr8 (39284257-39283905) | |
| 1-423, gnl|Mm7|chr8 (39284182-39283761) | |
| 1-423, gnl|monDom2|scaffold_36 (21313121-21312750) | |
| 1-423, gnl|monDom2|scaffold_36 (21313121-21312750) | |
| 1-423, gnl|oryCun1|scaffold_116774 (5310-5668) | |
| 1-423, gnl|oryCun1|scaffold_116774 (5310-5668) | |
| 1-423, gnl|panTro1|chr1 (115628177-115628537) | |
| 1-423, gnl|panTro1|chr1 (115628177-115628537) | |
| 1-423, gnl|rheMac2|chr1 (118542618-118542981) | |
| 1-423, gnl|rheMac2|chr1 (118542618-118542981) | |
| 1-423, gnl|rn3|chr16 (55136617-55136970) | |
| 1-423, gnl|rn3|chr16 (55136617-55136970) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.142308) |