Non-Coding RNA Search

Ss1.1-rlnt22c_o2.5

Sequence:


               
               GGCCGGGGCCCATGCCCACAGCGAGATGTCTGCCAGCCTGAGGAGCTACGACTTGCCCGT
CGGGATGAGCGTGGTGAAGAGAACTGCCTTTCTGAAATACGTCCCTATCTGCCCCGTCTT
CAAAGGATTTTCTTCAAGGTCAAAAGACCAGCTTCCAGTTCCGGCAGATGCCCCAGAAAA
TACAGACGCCAGGTCTGTGTGCACCAAGGTCTGAAGCATCACTGCCAGAAAAGGAAGCAT
GGTATATAAAAGGAAAAGAAAACTACATGGGGAGTCAGAAGACCTAAGCTGAATCCCAGC
TCCGCTAACTTCCTCTGTAGGCCTAGATAAGGCACTGTCTCTGGGACCCTGCTCTTCCAT
CAGTTAAGGGCAGAACAGACCAAAGGCCCTAACTAAGAGCCTTAGAGACTTGTACCACCA
TTATTCTACGTTTTTAAATTACTTTCCTAAGTAGATGTGTCGGCATATAGGGAACGGCTG
GAAATTTTCCTCAACCGCATCTCAACGCAAGTTGATAAAGACAAAAAGAAACCAGGATGG
ATTCCAGGGGCTGAAATGTAGGTATGCTGGCAGGCTTTTAGACTGAATCTAAGCCCCCAA
TGTCACTTACTTCAAGACCAAAGCATATTAAAATTAAACAGTGTGTTGGAGCAATAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGGGGCCCATGCCCACAGCGAGATGTCTGCCAGCCTGAGGAGCTACGACTTGCCCGT
CGGGATGAGCGTGGTGAAGAGAACTGCCTTTCTGAAATACGTCCCTATCTGCCCCGTCTT
CAAAGGATTTTCTTCAAGGTCAAAAGACCAGCTTCCAGTTCCGGCAGATGCCCCAGAAAA
TACAGACGCCAGGTCTGTGTGCACCAAGGTCTGAAGCATCACTGCCAGAAAAGGAAGCAT
GGTATATAAAAGGAAAAGAAAACTACATGGGGAGTCAGAAGACCTAAGCTGAATCCCAGC
TCCGCTAACTTCCTCTGTAGGCCTAGATAAGGCACTGTCTCTGGGACCCTGCTCTTCCAT
CAGTTAAGGGCAGAACAGACCAAAGGCCCTAACTAAGAGCCTTAGAGACTTGTACCACCA
TTATTCTACGTTTTTAAATTACTTTCCTAAGTAGATGTGTCGGCATATAGGGAACGGCTG
GAAATTTTCCTCAACCGCATCTCAACGCAAGTTGATAAAGACAAAAAGAAACCAGGATGG
ATTCCAGGGGCTGAAATGTAGGTATGCTGGCAGGCTTTTAGACTGAATCTAAGCCCCCAA
TGTCACTTACTTCAAGACCAAAGCATATTAAAATTAAACAGTGTGTTGGAGCAATAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-237, gnl|bosTau2|chr7 (37275907-37275678)
               

               
               2-237, gnl|Hg17|chr5 (138735806-138735571)
               

               
               2-237, gnl|Mm7|chr18 (35995718-35995485)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-237, gnl|bosTau2|chr7 (37275907-37275678)
               

               
               2-237, gnl|Hg17|chr5 (138735806-138735571)
               

               
               2-237, gnl|Mm7|chr18 (35995718-35995485)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               sin (0.349895)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               tra (0.123092)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               tra (0.123092)

	2-237, gnl\|bosTau2\|chr7 (37275907-37275678)
	2-237, gnl\|Hg17\|chr5 (138735806-138735571)
	2-237, gnl\|Mm7\|chr18 (35995718-35995485)

	sin (0.349895)
	sag (0.182715)
	ill (0.175593)
	nje (0.16592)
	cli (0.152812)
	eli (0.151814)
	lnt (0.142308)
	ste (0.135208)
	ute (0.132784)
	tra (0.123092)