Non-Coding RNA Search

Ss1.1-rlnt22c_p19.5.5

Sequence:


               
               GGGAAAAGAGAAGACCTGAGATCTGACTGTTCCAGCGGCTGACCGCTTCTTGGAGTGTGG
CACCGGGGCTTGGGGGCTTCCCTGGTCCTCAGCCTGCAGGCGGCCCCAGGATTCCCAGAC
AGACATGGTGATTGGCGGGAGGCGGAATATCCCCAGGGAAACCCATCTTCATGCCTGGGT
GACCCCCGCTGCCGCCTGCTTCTTAACTCTGCAGGAAATCAGGGCTGGCAGCCTCCTGTG
GGAGGATGGAGCCGGTTTCCATGGCAACCCTCGGCTGCCTCCTCCTGGCTTGGAAAGGAA
GGAAGGAGGCCAGCAGAAATAGCTCCAAGGAAGATCTCTCTTGTGCCTGGCTGCTACCCT
GCTGTGCTGGGGAAAAGCCCTTCTGACTTCCCCCTTCCAAATCAGGGCTCCTTGTCACTG
AGACTAGAGTCTCACCTGTGTTCAAAAAAGGGCCTGTTTGCTTTAAAGGTGGCACCTCCT
TGGAGCCACAATCATTAGGAAGAAACGATTCTCCTACCAGGCAACTCCAGCTGGTACCAG
AGATATCGAAGTACAGCTTGGGAGACAATGCTTTAAACCCACTCTTGTTTTAATCTTTAT
TCTTTTTTCTTTCTTCTTTTAAAAAATATAAGCTATGGAGAAAAGAGGGAGAGAAGAGCG
AGTTAGCTCCTTGCTAGTGGTTACTTAGGAAGGTACTGGACATCATTGTATTTCTTCATA
ACTTGCTTTACAATAAAAAATTGCAGGGCATACATCAGAAATGCTCTCAGGTTGACATAA
TGGAGTGTTTCTTTACCATCAGCATGATTATTATTTTTTGCTATATTTTGTGTTGTTGTT
TACCAGATATTTTTCTTTAAACAGACTCATTTTTTAAACTTAAATTTGTTTCAAAAGGGA
ACTTTTTTTTGCTGCTGGTAACTGACAACATGTATCACTTGCTGCCAAAAATAGAAAGTG
ACTGTGAAAAATAAATCTGCTGGGGAGGGGTCCTCCGTGCTAGTGTCACTAAGGCTCAGG
ACCTGAGATCTGTCTCTGTTACAAAATGAAACAAACAAGTGTTTGAAAGGTGTTAAGACC
ACACCAGCACCACCCTGAGACTTTGTCCTTGACAGTCAGGGGTGAAAGGAACAGGAAGAG
GAGTAGGCTGCCCACCAAAGGGTGTGCCTCACACGTGATTCGAAGGCCACGCAGAGTCAT
CTCCTGCCACCCGTGGGTCCTGCCCACAGTGAGCTGATGGTGTCCCACTGACCCATTCTT
CAGATGGAGAAACAGCCTCTGAGAGTTGAATTGTCTTGCTCAGTGTCATTGATCTGGATG
TTTGTTGTTGTTTTAAAGACACTGTTTCTTGAGTAGCAGCGACTGTTCCACCTTGCTGTT
TTAATAAAGAGCTCTATTTTCATATACTATCGTCGAGTGGAAATGTGCTGAAATACATTA
AACCATCCTCGTTTGTGAAAAAAACTCTGAGTGTGATTCAGATTGAGAGAGTCGGCCGTG
TCCAGAATGGCAAGGTTAGCACCCGGGAAGGGAGCTCCGAGCACCTACGCGTTGCGAGGC
TCTGGGGACAGGATCAAGTCACACCGCCAGCCACCCTCCAAGTCATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAAAGAGAAGACCTGAGATCTGACTGTTCCAGCGGCTGACCGCTTCTTGGAGTGTGG
CACCGGGGCTTGGGGGCTTCCCTGGTCCTCAGCCTGCAGGCGGCCCCAGGATTCCCAGAC
AGACATGGTGATTGGCGGGAGGCGGAATATCCCCAGGGAAACCCATCTTCATGCCTGGGT
GACCCCCGCTGCCGCCTGCTTCTTAACTCTGCAGGAAATCAGGGCTGGCAGCCTCCTGTG
GGAGGATGGAGCCGGTTTCCATGGCAACCCTCGGCTGCCTCCTCCTGGCTTGGAAAGGAA
GGAAGGAGGCCAGCAGAAATAGCTCCAAGGAAGATCTCTCTTGTGCCTGGCTGCTACCCT
GCTGTGCTGGGGAAAAGCCCTTCTGACTTCCCCCTTCCAAATCAGGGCTCCTTGTCACTG
AGACTAGAGTCTCACCTGTGTTCAAAAAAGGGCCTGTTTGCTTTAAAGGTGGCACCTCCT
TGGAGCCACAATCATTAGGAAGAAACGATTCTCCTACCAGGCAACTCCAGCTGGTACCAG
AGATATCGAAGTACAGCTTGGGAGACAATGCTTTAAACCCACTCTTGTTTTAATCTTTAT
TCTTTTTTCTTTCTTCTTTTAAAAAATATAAGCTATGGAGAAAAGAGGGAGAGAAGAGCG
AGTTAGCTCCTTGCTAGTGGTTACTTAGGAAGGTACTGGACATCATTGTATTTCTTCATA
ACTTGCTTTACAATAAAAAATTGCAGGGCATACATCAGAAATGCTCTCAGGTTGACATAA
TGGAGTGTTTCTTTACCATCAGCATGATTATTATTTTTTGCTATATTTTGTGTTGTTGTT
TACCAGATATTTTTCTTTAAACAGACTCATTTTTTAAACTTAAATTTGTTTCAAAAGGGA
ACTTTTTTTTGCTGCTGGTAACTGACAACATGTATCACTTGCTGCCAAAAATAGAAAGTG
ACTGTGAAAAATAAATCTGCTGGGGAGGGGTCCTCCGTGCTAGTGTCACTAAGGCTCAGG
ACCTGAGATCTGTCTCTGTTACAAAATGAAACAAACAAGTGTTTGAAAGGTGTTAAGACC
ACACCAGCACCACCCTGAGACTTTGTCCTTGACAGTCAGGGGTGAAAGGAACAGGAAGAG
GAGTAGGCTGCCCACCAAAGGGTGTGCCTCACACGTGATTCGAAGGCCACGCAGAGTCAT
CTCCTGCCACCCGTGGGTCCTGCCCACAGTGAGCTGATGGTGTCCCACTGACCCATTCTT
CAGATGGAGAAACAGCCTCTGAGAGTTGAATTGTCTTGCTCAGTGTCATTGATCTGGATG
TTTGTTGTTGTTTTAAAGACACTGTTTCTTGAGTAGCAGCGACTGTTCCACCTTGCTGTT
TTAATAAAGAGCTCTATTTTCATATACTATCGTCGAGTGGAAATGTGCTGAAATACATTA
AACCATCCTCGTTTGTGAAAAAAACTCTGAGTGTGATTCAGATTGAGAGAGTCGGCCGTG
TCCAGAATGGCAAGGTTAGCACCCGGGAAGGGAGCTCCGAGCACCTACGCGTTGCGAGGC
TCTGGGGACAGGATCAAGTCACACCGCCAGCCACCCTCCAAGTCATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               9-324, + strand, RNAz p=0.921286

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               9-324, + strand, RNAz p=0.921286

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000961, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000961, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               9-625, gnl|bosTau2|chr13 (57685003-57684392)
               

               
               9-625, gnl|Hg17|chr20 (47555890-47555283)
               

               
               9-625, gnl|Mm7|chr2 (166942855-166942282)
               


               
               771-1603, gnl|bosTau2|chr13 (57684364-57683530)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-625, gnl|bosTau2|chr13 (57685003-57684392)
               

               
               9-625, gnl|Hg17|chr20 (47555890-47555283)
               

               
               9-625, gnl|Mm7|chr2 (166942855-166942282)
               


               
               771-1603, gnl|bosTau2|chr13 (57684364-57683530)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               bla (0.497389)
               

               
               sug (0.381874)
               

               
               gul (0.355177)
               

               
               jca (0.34188)
               

               
               nco (0.323468)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.497389)
               

               
               sug (0.381874)
               

               
               gul (0.355177)
               

               
               jca (0.34188)
               

               
               nco (0.323468)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

	9-625, gnl\|bosTau2\|chr13 (57685003-57684392)
	9-625, gnl\|Hg17\|chr20 (47555890-47555283)
	9-625, gnl\|Mm7\|chr2 (166942855-166942282)

	771-1603, gnl\|bosTau2\|chr13 (57684364-57683530)

	bla (0.497389)
	sug (0.381874)
	gul (0.355177)
	jca (0.34188)
	nco (0.323468)
	aor (0.195274)
	sto (0.179824)
	cut (0.169924)
	bfe (0.149858)
	lnt (0.142308)
	nca (0.136874)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	eje (0.0988338)