Ss1.1-rlnt25c_o11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGGTGTCTCGTCCCCTTGCGGAGCCGCTCCTGCCGCCGCCGCCGCCGCCGCCTCCTCA TTCATCCTCGTGCACCATAGGCGGCACAGGCACCAAGATGTCCAACCGAGTGGTCTGCCG GGAAGCCAGTCACGCCGGGAGCTGGTACACAGCCTCAGGACCGCAGCTGAACGCACAGCT AGAAGGTTGGCTTTCACAAGTACAGTCTACAAAAAGACCTGCTAGAGCCATTATTGCACC CCATGCTGGATATACGTACTGTGGGTCTTGTGCTGCTCATGCTTACAAACAAGTGGATCC ATCTATTACCCGGAGAATTTTCATCCTTGGGCCTTCTCATCATGTGCCCCTTTCTCGATG TGCACTTTCCAGTGTGGATATATATAGGACACCTCTGTATGACCTTCGTATTGACCAAAA GATTTACGGAGAACTATGGAAGACAGGAATGTTTGAACGCATGTCTCTGCAGACAGATGA AGATGAACACAGTATTGAAATGCATTTGCCTTATACAGCTAAAGCCATGGAAAGCCATAA GGATGAGTTTACCATTATTCCTGTATTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAGGA ATTCGGAAAACTCTTCAGTAAATATCTAGCGGATCCTAGTAATCTCTTTGTGGTTTCTTC TGATTTCTGCCATTGGGGTCAAAGGTTCCGTTACAGTTACTATGATGAATCCCAGGGGGA GATTTATAGATCCATTGAACATCTAGATAAAATGGGTATGAGTATTATAGAACAATTAGA CCCTGTATCTTTTAGCAATTACTTGAAGAAATACCATAATACTATATGTGGAAGACATCC CATTGGGGTGTTATTAAATGCTATCACAGAGCTACAGAAGAATGGAATGAACATGAGCTT TTCCTTTTTGAATTATGCCCAGTCAAGCCAGTGTAGAAACTGGCAAGACAGTTCAGTGAG TTATGCAGCTGGAGCACTCACGGTTCACTGAAGCTCTGAATCCTCAGGGATGCCACCTGC ACATACTCATACTCTGTCCAGGGTCCCAGCCTAACCCTTACCAAGATACTGGTCCTGGTT TGGGGGGATTCCGAAACCTCAAACTAATAGAACTTTCTTCTCTTCTTTTTTAGTAGGTGT AGTCCTTCCTTAATTTCAACTCATTAAAAAAATGCTTTATAGTTTAGAGCAGTGGAAGGA AGGCTGGCATCAAAATATTTCGATCAAAAAAAGAGGCAATGTAAAGGCCCAGTTGTGGCA GTCAGTTTTTTGAAAGTAACTTGTAAAGCATTTACCATATCCTAAATTTGCACTCTTTGC AGACTTGTGCACATATACTCCGCTTTCAGAATAGTTTTGCAAAATTGTACACAAACAAAA AGGGTGGAAGCTTTTTAATAAAGAAATTGCATTTATAAATGATCTGTATTAGAAAATAAT AAATCTCCAGTTATAGTCAATTACTACCCATGTTGTACAACAGATACCTTCTATTTTAGT TGCTAATAAAGGGCTACACAACTCAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGGTGTCTCGTCCCCTTGCGGAGCCGCTCCTGCCGCCGCCGCCGCCGCCGCCTCCTCA TTCATCCTCGTGCACCATAGGCGGCACAGGCACCAAGATGTCCAACCGAGTGGTCTGCCG GGAAGCCAGTCACGCCGGGAGCTGGTACACAGCCTCAGGACCGCAGCTGAACGCACAGCT AGAAGGTTGGCTTTCACAAGTACAGTCTACAAAAAGACCTGCTAGAGCCATTATTGCACC CCATGCTGGATATACGTACTGTGGGTCTTGTGCTGCTCATGCTTACAAACAAGTGGATCC ATCTATTACCCGGAGAATTTTCATCCTTGGGCCTTCTCATCATGTGCCCCTTTCTCGATG TGCACTTTCCAGTGTGGATATATATAGGACACCTCTGTATGACCTTCGTATTGACCAAAA GATTTACGGAGAACTATGGAAGACAGGAATGTTTGAACGCATGTCTCTGCAGACAGATGA AGATGAACACAGTATTGAAATGCATTTGCCTTATACAGCTAAAGCCATGGAAAGCCATAA GGATGAGTTTACCATTATTCCTGTATTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAGGA ATTCGGAAAACTCTTCAGTAAATATCTAGCGGATCCTAGTAATCTCTTTGTGGTTTCTTC TGATTTCTGCCATTGGGGTCAAAGGTTCCGTTACAGTTACTATGATGAATCCCAGGGGGA GATTTATAGATCCATTGAACATCTAGATAAAATGGGTATGAGTATTATAGAACAATTAGA CCCTGTATCTTTTAGCAATTACTTGAAGAAATACCATAATACTATATGTGGAAGACATCC CATTGGGGTGTTATTAAATGCTATCACAGAGCTACAGAAGAATGGAATGAACATGAGCTT TTCCTTTTTGAATTATGCCCAGTCAAGCCAGTGTAGAAACTGGCAAGACAGTTCAGTGAG TTATGCAGCTGGAGCACTCACGGTTCACTGAAGCTCTGAATCCTCAGGGATGCCACCTGC ACATACTCATACTCTGTCCAGGGTCCCAGCCTAACCCTTACCAAGATACTGGTCCTGGTT TGGGGGGATTCCGAAACCTCAAACTAATAGAACTTTCTTCTCTTCTTTTTTAGTAGGTGT AGTCCTTCCTTAATTTCAACTCATTAAAAAAATGCTTTATAGTTTAGAGCAGTGGAAGGA AGGCTGGCATCAAAATATTTCGATCAAAAAAAGAGGCAATGTAAAGGCCCAGTTGTGGCA GTCAGTTTTTTGAAAGTAACTTGTAAAGCATTTACCATATCCTAAATTTGCACTCTTTGC AGACTTGTGCACATATACTCCGCTTTCAGAATAGTTTTGCAAAATTGTACACAAACAAAA AGGGTGGAAGCTTTTTAATAAAGAAATTGCATTTATAAATGATCTGTATTAGAAAATAAT AAATCTCCAGTTATAGTCAATTACTACCCATGTTGTACAACAGATACCTTCTATTTTAGT TGCTAATAAAGGGCTACACAACTCAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 532-651, + strand, RNAz p=0.707554 | |
| 940-1059, - strand, RNAz p=0.75635 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 532-651, + strand, RNAz p=0.707554 | |
| 940-1059, - strand, RNAz p=0.75635 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 301-422, gnl|bosTau2|chr11 (12066464-12066343) | |
| 301-422, gnl|canFam2|chr17 (28378193-28378325) | |
| 301-422, gnl|danRer3|chrUn (120861884-120862012) | |
| 301-422, gnl|dasNov1|scaffold_7862 (3812-3689) | |
| 301-422, gnl|echTel1|scaffold_281719 (1902-2037) | |
| 301-422, gnl|fr1|chrUn (15158631-15158757) | |
| 301-422, gnl|galGal2|chr3 (29969789-29969657) | |
| 301-422, gnl|hg17|chr2 (32057508-32057640) | |
| 301-422, gnl|Hg17|chr2 (32057639-32057518) | |
| 301-422, gnl|loxAfr1|scaffold_3772 (771-638) | |
| 301-422, gnl|mm7|chr17 (72533551-72533683) | |
| 301-422, gnl|Mm7|chr17 (72533682-72533561) | |
| 301-422, gnl|monDom2|scaffold_1 (142344516-142344384) | |
| 301-422, gnl|oryCun1|scaffold_123188 (3243-3111) | |
| 301-422, gnl|panTro1|chr12 (33080704-33080836) | |
| 301-422, gnl|rheMac2|chr13 (31958544-31958676) | |
| 301-422, gnl|rn3|chr6 (21163524-21163392) | |
| 301-422, gnl|tetNig1|chr17 (2196029-2195906) | |
| 301-422, gnl|xenTro1|scaffold_303 (106178-106307) | |
| 494-843, gnl|bosTau2|chr12 (37437332-37437675) | |
| 494-843, gnl|Hg17|chr13 (94844301-94844641) | |
| 494-843, gnl|Mm7|chr11 (107113443-107113096) | |
| 532-679, gnl|bosTau2|chr11 (12043261-12043114) | |
| 532-679, gnl|Hg17|chr2 (32028857-32028710) | |
| 532-679, gnl|Mm7|chr17 (72514162-72514015) | |
| 860-1529, gnl|bosTau2|chr11 (12022816-12022144) | |
| 860-1529, gnl|Hg17|chr2 (32005212-32004543) | |
| 860-1529, gnl|Mm7|chr17 (72489844-72489221) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 301-422, gnl|bosTau2|chr11 (12066464-12066343) | |
| 301-422, gnl|canFam2|chr17 (28378193-28378325) | |
| 301-422, gnl|danRer3|chrUn (120861884-120862012) | |
| 301-422, gnl|dasNov1|scaffold_7862 (3812-3689) | |
| 301-422, gnl|echTel1|scaffold_281719 (1902-2037) | |
| 301-422, gnl|fr1|chrUn (15158631-15158757) | |
| 301-422, gnl|galGal2|chr3 (29969789-29969657) | |
| 301-422, gnl|hg17|chr2 (32057508-32057640) | |
| 301-422, gnl|Hg17|chr2 (32057639-32057518) | |
| 301-422, gnl|loxAfr1|scaffold_3772 (771-638) | |
| 301-422, gnl|mm7|chr17 (72533551-72533683) | |
| 301-422, gnl|Mm7|chr17 (72533682-72533561) | |
| 301-422, gnl|monDom2|scaffold_1 (142344516-142344384) | |
| 301-422, gnl|oryCun1|scaffold_123188 (3243-3111) | |
| 301-422, gnl|panTro1|chr12 (33080704-33080836) | |
| 301-422, gnl|rheMac2|chr13 (31958544-31958676) | |
| 301-422, gnl|rn3|chr6 (21163524-21163392) | |
| 301-422, gnl|tetNig1|chr17 (2196029-2195906) | |
| 301-422, gnl|xenTro1|scaffold_303 (106178-106307) | |
| 494-843, gnl|bosTau2|chr12 (37437332-37437675) | |
| 494-843, gnl|Hg17|chr13 (94844301-94844641) | |
| 494-843, gnl|Mm7|chr11 (107113443-107113096) | |
| 532-679, gnl|bosTau2|chr11 (12043261-12043114) | |
| 532-679, gnl|Hg17|chr2 (32028857-32028710) | |
| 532-679, gnl|Mm7|chr17 (72514162-72514015) | |
| 860-1529, gnl|bosTau2|chr11 (12022816-12022144) | |
| 860-1529, gnl|Hg17|chr2 (32005212-32004543) | |
| 860-1529, gnl|Mm7|chr17 (72489844-72489221) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| vin (0.665115) | |
| isp (0.601504) | |
| thg (0.380373) | |
| sin (0.349895) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| kid (0.259471) | |
| ece (0.229305) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ste (0.135208) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cty (0.10408) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.665115) | |
| isp (0.601504) | |
| thg (0.380373) | |
| sin (0.349895) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| kid (0.259471) | |
| ece (0.229305) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ste (0.135208) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cty (0.10408) |