Non-Coding RNA Search

Ss1.1-rlnt26c_a3.5

Sequence:


               
               GGTTTATTTGGAGAAGGAATTGTGGAGAGTTTAATTCATGCATGGGAGCATTTACTCTTA
CAGCCAAAGACCAAAGGTGAAAATGGTAATTGTGAAAAATATGGGAAAGTTATACCAGCA
AGTGCTGTTATATTTGGGATGGCAGTAGAATGTGCAGAGATAAGAAGGCATCATAGGGTG
GGTATTAAGGATGTTGCTGGGATCTGTTTGCCAACCAATGTGAAATTTCAGAGTCCAGCT
TATTCTTCTGTTGATGCCGAAGAAACAGTCGAACCTTATACAACTGAAAAGATGAGTCGA
GTTCCTGGGGGATATTTAGCTTTGACAGAGTGCTTTGAAATTATGACAGTAGATTTCAAC
AATCTTCAGGAATTGAAGAGTCTCGCAACTAAAAAACCTGATAAAATTGGTATTCCTGTT
ATTAAAGAAGGCGTGCTAGATGCCATCGTGGTTTGGTTGGAACTCCAGCTTGATGATGAA
CACAGTTTGTCCACAAGTCCTAGTGAAGAAACATGTTGGGAACAGGCTGTCTACCCTGTA
CATGACCTTGCAGACTACTGGATAAAGCCTGGGGACCAGGTGATGATGGAAGTGTCCTGT
CAGGATTGTTACTTAAGAATCCAGAGCATCAGTGTCTTCAGTTCAGATCATGAAATGGAT
GTGGGGACAAGTTTTACCAAGAGTAAAGATTTGCTGTCCTTAGGAAATGAGGCTGAACTC
TGCAGTGCCCTGGCGAACCTTCAGACCAGTACACCAGACTCTGCGGAGCAGATATGTGTA
TTGGAATCCACAGAAATTGCTTTGCTTAATAATGTCCCATACCACGAAGGCTTTAAAACG
GCAATGAGGAAAGTGTTGTCTTCACTGACTCCGGAGAAACTGGGTCAGGCCATGGATACG
CAGTGTCAGAATAATGAGATAAACTGTGGTAGTGGACAGAATGACTCTGAACCTTTCTAT
GTGTTGGATGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTTATTTGGAGAAGGAATTGTGGAGAGTTTAATTCATGCATGGGAGCATTTACTCTTA
CAGCCAAAGACCAAAGGTGAAAATGGTAATTGTGAAAAATATGGGAAAGTTATACCAGCA
AGTGCTGTTATATTTGGGATGGCAGTAGAATGTGCAGAGATAAGAAGGCATCATAGGGTG
GGTATTAAGGATGTTGCTGGGATCTGTTTGCCAACCAATGTGAAATTTCAGAGTCCAGCT
TATTCTTCTGTTGATGCCGAAGAAACAGTCGAACCTTATACAACTGAAAAGATGAGTCGA
GTTCCTGGGGGATATTTAGCTTTGACAGAGTGCTTTGAAATTATGACAGTAGATTTCAAC
AATCTTCAGGAATTGAAGAGTCTCGCAACTAAAAAACCTGATAAAATTGGTATTCCTGTT
ATTAAAGAAGGCGTGCTAGATGCCATCGTGGTTTGGTTGGAACTCCAGCTTGATGATGAA
CACAGTTTGTCCACAAGTCCTAGTGAAGAAACATGTTGGGAACAGGCTGTCTACCCTGTA
CATGACCTTGCAGACTACTGGATAAAGCCTGGGGACCAGGTGATGATGGAAGTGTCCTGT
CAGGATTGTTACTTAAGAATCCAGAGCATCAGTGTCTTCAGTTCAGATCATGAAATGGAT
GTGGGGACAAGTTTTACCAAGAGTAAAGATTTGCTGTCCTTAGGAAATGAGGCTGAACTC
TGCAGTGCCCTGGCGAACCTTCAGACCAGTACACCAGACTCTGCGGAGCAGATATGTGTA
TTGGAATCCACAGAAATTGCTTTGCTTAATAATGTCCCATACCACGAAGGCTTTAAAACG
GCAATGAGGAAAGTGTTGTCTTCACTGACTCCGGAGAAACTGGGTCAGGCCATGGATACG
CAGTGTCAGAATAATGAGATAAACTGTGGTAGTGGACAGAATGACTCTGAACCTTTCTAT
GTGTTGGATGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61839823|ref|XP_585969.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61839823|ref|XP_585969.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               175-293, + strand, RNAz p=0.650222

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               175-293, + strand, RNAz p=0.650222

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC064403, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC064403, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               175-370, gnl|bosTau2|chr17 (5576955-5576760)
               

               
               175-370, gnl|Hg17|chr4 (148939796-148939601)
               

               
               175-370, gnl|Mm7|chr8 (76108595-76108790)
               


               
               552-950, gnl|bosTau2|chr17 (5571792-5571394)
               

               
               552-950, gnl|canFam2|chr15 (49012127-49012590)
               

               
               552-950, gnl|danRer3|chr1 (44324487-44324054)
               

               
               552-950, gnl|dasNov1|scaffold_150342 (1963-2429)
               

               
               552-950, gnl|echTel1|scaffold_284127 (44132-43684)
               

               
               552-950, gnl|fr1|chrUn (26439515-26439936)
               

               
               552-950, gnl|galGal2|chr4 (32434405-32434874)
               

               
               552-950, gnl|hg17|chr4 (148932708-148933168)
               

               
               552-950, gnl|Hg17|chr4 (148933324-148932929)
               

               
               552-950, gnl|loxAfr1|scaffold_11512 (13519-13986)
               

               
               552-950, gnl|mm7|chr8 (76116271-76115808)
               

               
               552-950, gnl|Mm7|chr8 (76115646-76116048)
               

               
               552-950, gnl|monDom2|scaffold_9 (16539068-16539534)
               

               
               552-950, gnl|oryCun1|scaffold_92768 (1016-1479)
               

               
               552-950, gnl|panTro1|chr3 (166197093-166197553)
               

               
               552-950, gnl|rheMac2|chr5 (139852950-139853410)
               

               
               552-950, gnl|rn3|chr19 (32207394-32207842)
               

               
               552-950, gnl|tetNig1|chr18 (7147514-7147938)
               

               
               552-950, gnl|xenTro1|scaffold_360 (3099-2654)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-370, gnl|bosTau2|chr17 (5576955-5576760)
               

               
               175-370, gnl|Hg17|chr4 (148939796-148939601)
               

               
               175-370, gnl|Mm7|chr8 (76108595-76108790)
               


               
               552-950, gnl|bosTau2|chr17 (5571792-5571394)
               

               
               552-950, gnl|canFam2|chr15 (49012127-49012590)
               

               
               552-950, gnl|danRer3|chr1 (44324487-44324054)
               

               
               552-950, gnl|dasNov1|scaffold_150342 (1963-2429)
               

               
               552-950, gnl|echTel1|scaffold_284127 (44132-43684)
               

               
               552-950, gnl|fr1|chrUn (26439515-26439936)
               

               
               552-950, gnl|galGal2|chr4 (32434405-32434874)
               

               
               552-950, gnl|hg17|chr4 (148932708-148933168)
               

               
               552-950, gnl|Hg17|chr4 (148933324-148932929)
               

               
               552-950, gnl|loxAfr1|scaffold_11512 (13519-13986)
               

               
               552-950, gnl|mm7|chr8 (76116271-76115808)
               

               
               552-950, gnl|Mm7|chr8 (76115646-76116048)
               

               
               552-950, gnl|monDom2|scaffold_9 (16539068-16539534)
               

               
               552-950, gnl|oryCun1|scaffold_92768 (1016-1479)
               

               
               552-950, gnl|panTro1|chr3 (166197093-166197553)
               

               
               552-950, gnl|rheMac2|chr5 (139852950-139853410)
               

               
               552-950, gnl|rn3|chr19 (32207394-32207842)
               

               
               552-950, gnl|tetNig1|chr18 (7147514-7147938)
               

               
               552-950, gnl|xenTro1|scaffold_360 (3099-2654)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               lnt (0.142308)

	175-370, gnl\|bosTau2\|chr17 (5576955-5576760)
	175-370, gnl\|Hg17\|chr4 (148939796-148939601)
	175-370, gnl\|Mm7\|chr8 (76108595-76108790)

	552-950, gnl\|bosTau2\|chr17 (5571792-5571394)
	552-950, gnl\|canFam2\|chr15 (49012127-49012590)
	552-950, gnl\|danRer3\|chr1 (44324487-44324054)
	552-950, gnl\|dasNov1\|scaffold_150342 (1963-2429)
	552-950, gnl\|echTel1\|scaffold_284127 (44132-43684)
	552-950, gnl\|fr1\|chrUn (26439515-26439936)
	552-950, gnl\|galGal2\|chr4 (32434405-32434874)
	552-950, gnl\|hg17\|chr4 (148932708-148933168)
	552-950, gnl\|Hg17\|chr4 (148933324-148932929)
	552-950, gnl\|loxAfr1\|scaffold_11512 (13519-13986)
	552-950, gnl\|mm7\|chr8 (76116271-76115808)
	552-950, gnl\|Mm7\|chr8 (76115646-76116048)
	552-950, gnl\|monDom2\|scaffold_9 (16539068-16539534)
	552-950, gnl\|oryCun1\|scaffold_92768 (1016-1479)
	552-950, gnl\|panTro1\|chr3 (166197093-166197553)
	552-950, gnl\|rheMac2\|chr5 (139852950-139853410)
	552-950, gnl\|rn3\|chr19 (32207394-32207842)
	552-950, gnl\|tetNig1\|chr18 (7147514-7147938)
	552-950, gnl\|xenTro1\|scaffold_360 (3099-2654)