Ss1.1-rlnt26c_g16.5.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CGCAGCCGGCCCGCGCTCCGTGTCTTCTCGCCGCTCCTCCGCTCGCTCCTCCGCGCCCCG CGGCCGCCGTCTCCGCCGATCGCCATGGAAGAAGAGATCGCCGCGCTGGTCATCGACAAT GGCTCCGGCATGTGCAAAGCTGGCTTTGCTGGGGATGACGCCCCCCGGGCCGTGTTCCCG TCCATCGTCGGGCGTCCCCGACACCAGGGTGTCATGGTGGGCATGGGCCAGAAGGACAGC TACGTGGGCGACGAGGCTCAGAGCAAGCGGGGCATCCTGACCCTCAAGTACCCCATCGAA CACGGCATCGTCACCAACTGGGACGACATGGAGAAGATCTGGCATCACACCTTCTACAAC GAGCTGCGCGTGGCCCCCGAGGAGCACCCCGTGCTGCTCACGGAGGCCCCCCTGAACCCC AAGGCCAACCGTGAGAAGATGACTCAGATCATGTTCGAGACCTTCAACACGCCGGCCATG TACGTGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCTGGCCGCACCACTGGCATTGTC ATGGACTCTGGGGATGGGGTCACCCACACGGTGCCCATCTACGAGGGGTACGCCCTGCCC CACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACCGACTACCTCATGAAGATC CTCACGGAGCGGGGCTACAGCTTCACCACCACGGCCGAGCGGGAGATCGTGCGGGACATC AAGGAGAAGCTCTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACCGCCGCGTCC TCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCCGACGGCCAGGTCATCACCATCGGCAAC GAGCGCTTCCGGTGTCCAGAGGCGCTCTTCCAGCCCTCCTTCCTGGGCATGGAGTCCTGC GGCATCCACGAGACCACCTTCAACTCGATCATGAAGTGCGACGTGGACATCAGGAAGGAC CTCTACGCCAACACGGTGCTGTCTGGCGGGACCACCATGTACCCCGGCATCGCCGACAGG ATGCAGAAGGAGATCACGGCCCTGGCGCCCAGCACCATGAAGATCAAGATCATCGCGCCT CCCGAGCGCAAGTACTCGGTGTGGATCGGGGGCTCCATCCTGGCCTCGCTGTCCACCTTC CAGCAGATGTGGATCAGCAAGCAGGAGTACGACGAGTCGGGCCCGTCCATCGTCCACCGC AAATGCTTCTAGACGGACTGCGAGCAGATGCGTAGCATTTGCTGCATGAGCTAATCCAGA AATAAAGTTTGCCCTGGCAAATGTACACACCTCATGCCAGCCTCCTGAAACTGGAATAAG CCTTTGAAAAGAAATTTGTCCTTGAAGCTTGTATCTGGTATCAGCACTGGATTGTAGACC TTGTTGCTGATTTTGACCTTGTACTCGAGTTAACTCTTCCCTTGGTCTCTGTTTAATACC CTGTGCATATCTTTGATTTAAACCCCTAGTTACACACACGCGGCTCTGTCACCTCGTGGC TGAGGTGAGAACCTGTTTATCGTGGAAGAGAAATCCGTTGGCTGGTTGAGAATCTGAGAC GGAGTCTCTCCGATCTGTGCAGGGTATTCATGTGTCCGAGCTCCTATTCCAGGATTTCTC TCGAGGCTGGCAAGAGTCCTGAACCAGTTGTCATTTCTGTCTTGCCGGTCTGACGGGGTT GGGAAGGTCCGAGCCTTAGGACCCACTGTCCTTTCTTCCCCGATGTTTGCCCGCCAGAAA ACCGTGGGTTGTTAACTTGCCTTGAGTTGGAAGCGTTTGCATTCACACCTGTAAATTTAT TCATCCTTTTAATTTATGTAAGGTTTTTGTACGCAATTCTCAATTCCTTAAGAGATGACA ACAGATTTTGGTTTTCTACTGTCACGTGAGAACGTTAGGCCCCAGCAACGCGTCATTGTG AGGAAATAAAGTGCTGCAGTAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CGCAGCCGGCCCGCGCTCCGTGTCTTCTCGCCGCTCCTCCGCTCGCTCCTCCGCGCCCCG CGGCCGCCGTCTCCGCCGATCGCCATGGAAGAAGAGATCGCCGCGCTGGTCATCGACAAT GGCTCCGGCATGTGCAAAGCTGGCTTTGCTGGGGATGACGCCCCCCGGGCCGTGTTCCCG TCCATCGTCGGGCGTCCCCGACACCAGGGTGTCATGGTGGGCATGGGCCAGAAGGACAGC TACGTGGGCGACGAGGCTCAGAGCAAGCGGGGCATCCTGACCCTCAAGTACCCCATCGAA CACGGCATCGTCACCAACTGGGACGACATGGAGAAGATCTGGCATCACACCTTCTACAAC GAGCTGCGCGTGGCCCCCGAGGAGCACCCCGTGCTGCTCACGGAGGCCCCCCTGAACCCC AAGGCCAACCGTGAGAAGATGACTCAGATCATGTTCGAGACCTTCAACACGCCGGCCATG TACGTGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCTGGCCGCACCACTGGCATTGTC ATGGACTCTGGGGATGGGGTCACCCACACGGTGCCCATCTACGAGGGGTACGCCCTGCCC CACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACCGACTACCTCATGAAGATC CTCACGGAGCGGGGCTACAGCTTCACCACCACGGCCGAGCGGGAGATCGTGCGGGACATC AAGGAGAAGCTCTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACCGCCGCGTCC TCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCCGACGGCCAGGTCATCACCATCGGCAAC GAGCGCTTCCGGTGTCCAGAGGCGCTCTTCCAGCCCTCCTTCCTGGGCATGGAGTCCTGC GGCATCCACGAGACCACCTTCAACTCGATCATGAAGTGCGACGTGGACATCAGGAAGGAC CTCTACGCCAACACGGTGCTGTCTGGCGGGACCACCATGTACCCCGGCATCGCCGACAGG ATGCAGAAGGAGATCACGGCCCTGGCGCCCAGCACCATGAAGATCAAGATCATCGCGCCT CCCGAGCGCAAGTACTCGGTGTGGATCGGGGGCTCCATCCTGGCCTCGCTGTCCACCTTC CAGCAGATGTGGATCAGCAAGCAGGAGTACGACGAGTCGGGCCCGTCCATCGTCCACCGC AAATGCTTCTAGACGGACTGCGAGCAGATGCGTAGCATTTGCTGCATGAGCTAATCCAGA AATAAAGTTTGCCCTGGCAAATGTACACACCTCATGCCAGCCTCCTGAAACTGGAATAAG CCTTTGAAAAGAAATTTGTCCTTGAAGCTTGTATCTGGTATCAGCACTGGATTGTAGACC TTGTTGCTGATTTTGACCTTGTACTCGAGTTAACTCTTCCCTTGGTCTCTGTTTAATACC CTGTGCATATCTTTGATTTAAACCCCTAGTTACACACACGCGGCTCTGTCACCTCGTGGC TGAGGTGAGAACCTGTTTATCGTGGAAGAGAAATCCGTTGGCTGGTTGAGAATCTGAGAC GGAGTCTCTCCGATCTGTGCAGGGTATTCATGTGTCCGAGCTCCTATTCCAGGATTTCTC TCGAGGCTGGCAAGAGTCCTGAACCAGTTGTCATTTCTGTCTTGCCGGTCTGACGGGGTT GGGAAGGTCCGAGCCTTAGGACCCACTGTCCTTTCTTCCCCGATGTTTGCCCGCCAGAAA ACCGTGGGTTGTTAACTTGCCTTGAGTTGGAAGCGTTTGCATTCACACCTGTAAATTTAT TCATCCTTTTAATTTATGTAAGGTTTTTGTACGCAATTCTCAATTCCTTAAGAGATGACA ACAGATTTTGGTTTTCTACTGTCACGTGAGAACGTTAGGCCCCAGCAACGCGTCATTGTG AGGAAATAAAGTGCTGCAGTAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 4 entry(ies) | More info |
Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
206-1718, - strand, RNAz p=0.775503 | |
472-887, - strand, RNAz p=0.83956 | |
694-801, + strand, RNAz p=0.826781 | |
777-887, - strand, RNAz p=0.843457 |
Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
206-1718, - strand, RNAz p=0.775503 | |
472-887, - strand, RNAz p=0.83956 | |
694-801, + strand, RNAz p=0.826781 | |
777-887, - strand, RNAz p=0.843457 |
Aligned organism(s): 62 entry(ies) | More info |
Aligned organism(s): 62 entry(ies) | Help | Less info |
86-1220, gnl|bosTau2|chr1 (93219663-93218519) | |
86-1220, gnl|Hg17|chr7 (5342528-5340612) | |
86-1220, gnl|Mm7|chr5 (141938590-141936695) | |
206-533, gnl|bosTau2|chr10 (19086812-19086485) | |
206-533, gnl|canFam2|chr30 (5506751-5507104) | |
206-533, gnl|dasNov1|scaffold_19757 (44022-43669) | |
206-533, gnl|echTel1|scaffold_318944 (3386-3034) | |
206-533, gnl|fr1|chrUn (63305598-63305946) | |
206-533, gnl|galGal2|chr5 (29145784-29145442) | |
206-533, gnl|hg17|chr15 (32872717-32873069) | |
206-533, gnl|Hg17|chr15 (32873064-32872737) | |
206-533, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
206-533, gnl|mm7|chr2 (113791108-113791460) | |
206-533, gnl|Mm7|chr2 (113791455-113791128) | |
206-533, gnl|monDom2|scaffold_12 (9572456-9572112) | |
206-533, gnl|oryCun1|scaffold_179293 (445-93) | |
206-533, gnl|panTro1|chr16 (32653340-32653692) | |
206-533, gnl|rheMac2|chr7 (13132136-13132488) | |
206-533, gnl|rn3|chr3 (99800397-99800748) | |
206-533, gnl|tetNig1|chr10 (7897220-7896871) | |
206-533, gnl|xenTro1|scaffold_199 (677786-677445) | |
694-887, gnl|bosTau2|chr10 (19085483-19085290) | |
694-887, gnl|canFam2|chr30 (5505628-5505833) | |
694-887, gnl|danRer3|chr14 (32886032-32885827) | |
694-887, gnl|dasNov1|scaffold_1043 (13637-13827) | |
694-887, gnl|echTel1|scaffold_318944 (4473-4268) | |
694-887, gnl|fr1|chrUn (63305079-63305280) | |
694-887, gnl|galGal2|chr5 (29146862-29146670) | |
694-887, gnl|hg17|chr15 (32871574-32871779) | |
694-887, gnl|Hg17|chr15 (32871775-32871582) | |
694-887, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
694-887, gnl|mm7|chr2 (113790000-113790205) | |
694-887, gnl|Mm7|chr2 (113790201-113790008) | |
694-887, gnl|monDom2|scaffold_12 (9573880-9573675) | |
694-887, gnl|oryCun1|scaffold_214311 (43778-43970) | |
694-887, gnl|panTro1|chr16 (32652195-32652400) | |
694-887, gnl|rheMac2|chr7 (13130989-13131194) | |
694-887, gnl|rn3|chr3 (99799298-99799503) | |
694-887, gnl|tetNig1|chr10 (7897776-7897575) | |
694-887, gnl|xenTro1|scaffold_199 (679801-679596) | |
1067-1211, gnl|bosTau2|chr10 (19083781-19083637) | |
1067-1211, gnl|canFam2|chr30 (5503985-5504181) | |
1067-1211, gnl|danRer3|chr14 (32888947-32888749) | |
1067-1211, gnl|dasNov1|scaffold_19757 (46926-46730) | |
1067-1211, gnl|echTel1|scaffold_318944 (6298-6097) | |
1067-1211, gnl|fr1|chrUn (63304276-63304437) | |
1067-1211, gnl|galGal2|chr5 (29148742-29148542) | |
1067-1211, gnl|hg17|chr15 (32869867-32870064) | |
1067-1211, gnl|Hg17|chr15 (32870050-32869906) | |
1067-1211, gnl|loxAfr1|scaffold_10024 (30384-30190) | |
1067-1211, gnl|mm7|chr2 (113788269-113788465) | |
1067-1211, gnl|Mm7|chr2 (113788451-113788307) | |
1067-1211, gnl|monDom2|scaffold_12 (9576524-9576327) | |
1067-1211, gnl|oryCun1|scaffold_179293 (3266-3069) | |
1067-1211, gnl|panTro1|chr16 (32650491-32650688) | |
1067-1211, gnl|rheMac2|chr7 (13129319-13129512) | |
1067-1211, gnl|rn3|chr3 (99797588-99797772) | |
1067-1211, gnl|tetNig1|chr10 (7898617-7898430) | |
1067-1211, gnl|xenTro1|scaffold_199 (681082-680896) | |
1601-1952, gnl|bosTau2|chr19 (26727051-26726703) | |
1601-1952, gnl|Hg17|chr17 (77091927-77091592) | |
1601-1952, gnl|Mm7|chr4 (102941345-102941674) |
Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
86-1220, gnl|bosTau2|chr1 (93219663-93218519) | |
86-1220, gnl|Hg17|chr7 (5342528-5340612) | |
86-1220, gnl|Mm7|chr5 (141938590-141936695) | |
206-533, gnl|bosTau2|chr10 (19086812-19086485) | |
206-533, gnl|canFam2|chr30 (5506751-5507104) | |
206-533, gnl|dasNov1|scaffold_19757 (44022-43669) | |
206-533, gnl|echTel1|scaffold_318944 (3386-3034) | |
206-533, gnl|fr1|chrUn (63305598-63305946) | |
206-533, gnl|galGal2|chr5 (29145784-29145442) | |
206-533, gnl|hg17|chr15 (32872717-32873069) | |
206-533, gnl|Hg17|chr15 (32873064-32872737) | |
206-533, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
206-533, gnl|mm7|chr2 (113791108-113791460) | |
206-533, gnl|Mm7|chr2 (113791455-113791128) | |
206-533, gnl|monDom2|scaffold_12 (9572456-9572112) | |
206-533, gnl|oryCun1|scaffold_179293 (445-93) | |
206-533, gnl|panTro1|chr16 (32653340-32653692) | |
206-533, gnl|rheMac2|chr7 (13132136-13132488) | |
206-533, gnl|rn3|chr3 (99800397-99800748) | |
206-533, gnl|tetNig1|chr10 (7897220-7896871) | |
206-533, gnl|xenTro1|scaffold_199 (677786-677445) | |
694-887, gnl|bosTau2|chr10 (19085483-19085290) | |
694-887, gnl|canFam2|chr30 (5505628-5505833) | |
694-887, gnl|danRer3|chr14 (32886032-32885827) | |
694-887, gnl|dasNov1|scaffold_1043 (13637-13827) | |
694-887, gnl|echTel1|scaffold_318944 (4473-4268) | |
694-887, gnl|fr1|chrUn (63305079-63305280) | |
694-887, gnl|galGal2|chr5 (29146862-29146670) | |
694-887, gnl|hg17|chr15 (32871574-32871779) | |
694-887, gnl|Hg17|chr15 (32871775-32871582) | |
694-887, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
694-887, gnl|mm7|chr2 (113790000-113790205) | |
694-887, gnl|Mm7|chr2 (113790201-113790008) | |
694-887, gnl|monDom2|scaffold_12 (9573880-9573675) | |
694-887, gnl|oryCun1|scaffold_214311 (43778-43970) | |
694-887, gnl|panTro1|chr16 (32652195-32652400) | |
694-887, gnl|rheMac2|chr7 (13130989-13131194) | |
694-887, gnl|rn3|chr3 (99799298-99799503) | |
694-887, gnl|tetNig1|chr10 (7897776-7897575) | |
694-887, gnl|xenTro1|scaffold_199 (679801-679596) | |
1067-1211, gnl|bosTau2|chr10 (19083781-19083637) | |
1067-1211, gnl|canFam2|chr30 (5503985-5504181) | |
1067-1211, gnl|danRer3|chr14 (32888947-32888749) | |
1067-1211, gnl|dasNov1|scaffold_19757 (46926-46730) | |
1067-1211, gnl|echTel1|scaffold_318944 (6298-6097) | |
1067-1211, gnl|fr1|chrUn (63304276-63304437) | |
1067-1211, gnl|galGal2|chr5 (29148742-29148542) | |
1067-1211, gnl|hg17|chr15 (32869867-32870064) | |
1067-1211, gnl|Hg17|chr15 (32870050-32869906) | |
1067-1211, gnl|loxAfr1|scaffold_10024 (30384-30190) | |
1067-1211, gnl|mm7|chr2 (113788269-113788465) | |
1067-1211, gnl|Mm7|chr2 (113788451-113788307) | |
1067-1211, gnl|monDom2|scaffold_12 (9576524-9576327) | |
1067-1211, gnl|oryCun1|scaffold_179293 (3266-3069) | |
1067-1211, gnl|panTro1|chr16 (32650491-32650688) | |
1067-1211, gnl|rheMac2|chr7 (13129319-13129512) | |
1067-1211, gnl|rn3|chr3 (99797588-99797772) | |
1067-1211, gnl|tetNig1|chr10 (7898617-7898430) | |
1067-1211, gnl|xenTro1|scaffold_199 (681082-680896) | |
1601-1952, gnl|bosTau2|chr19 (26727051-26726703) | |
1601-1952, gnl|Hg17|chr17 (77091927-77091592) | |
1601-1952, gnl|Mm7|chr4 (102941345-102941674) |
Expressed library(ies): 74 entry(ies) | More info |
Expressed library(ies): 74 entry(ies) | Help | Less info |
cly (7.72108) | |
cov (6.21118) | |
ecc (5.63672) | |
eep (5.39282) | |
ece (5.27402) | |
ebs (5.08695) | |
nlu (4.98371) | |
mcp (4.43686) | |
cag (4.38464) | |
ill (4.21422) | |
clu (4.1876) | |
fcc (4.15348) | |
eye (4.09207) | |
eru (4.08163) | |
fty (4.04431) | |
csp (3.86847) | |
fce (3.80228) | |
nco (3.23468) | |
jej (3.1655) | |
ton (3.159) | |
nmm (3.05445) | |
ese (2.90955) | |
cst (2.80073) | |
jca (2.73504) | |
elu (2.6975) | |
med (2.6738) | |
lnt (2.56155) | |
amn (2.50627) | |
nca (2.46373) | |
eje (2.27318) | |
nje (2.15696) | |
col (2.14509) | |
fbs (2.10416) | |
ute (1.85898) | |
hyp (1.85688) | |
cli (1.83374) | |
cga (1.67457) | |
cty (1.66528) | |
nep (1.65532) | |
cki (1.65235) | |
cbl (1.60716) | |
pty (1.56986) | |
nbm (1.39054) | |
fhi (1.35662) | |
duo (1.20961) | |
cje (1.15664) | |
cmu (0.931966) | |
sag (0.913576) | |
sto (0.899119) | |
nms (0.855432) | |
fli (0.811524) | |
spl (0.715922) | |
eli (0.607257) | |
cte (0.58548) | |
hlv (0.557025) | |
gul (0.532765) | |
cut (0.509771) | |
pgl (0.473934) | |
mas (0.42061) | |
aor (0.390549) | |
bla (0.373042) | |
che (0.272628) | |
ova (0.258264) | |
cbe (0.239234) | |
tes (0.207814) | |
ldo (0.194005) | |
sin (0.174948) | |
rec (0.17307) | |
ctl (0.153069) | |
liv (0.146284) | |
lin (0.145603) | |
ssp (0.13552) | |
ste (0.135208) | |
cbr (0.127975) |
Expressed library(ies): 74 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cly (7.72108) | |
cov (6.21118) | |
ecc (5.63672) | |
eep (5.39282) | |
ece (5.27402) | |
ebs (5.08695) | |
nlu (4.98371) | |
mcp (4.43686) | |
cag (4.38464) | |
ill (4.21422) | |
clu (4.1876) | |
fcc (4.15348) | |
eye (4.09207) | |
eru (4.08163) | |
fty (4.04431) | |
csp (3.86847) | |
fce (3.80228) | |
nco (3.23468) | |
jej (3.1655) | |
ton (3.159) | |
nmm (3.05445) | |
ese (2.90955) | |
cst (2.80073) | |
jca (2.73504) | |
elu (2.6975) | |
med (2.6738) | |
lnt (2.56155) | |
amn (2.50627) | |
nca (2.46373) | |
eje (2.27318) | |
nje (2.15696) | |
col (2.14509) | |
fbs (2.10416) | |
ute (1.85898) | |
hyp (1.85688) | |
cli (1.83374) | |
cga (1.67457) | |
cty (1.66528) | |
nep (1.65532) | |
cki (1.65235) | |
cbl (1.60716) | |
pty (1.56986) | |
nbm (1.39054) | |
fhi (1.35662) | |
duo (1.20961) | |
cje (1.15664) | |
cmu (0.931966) | |
sag (0.913576) | |
sto (0.899119) | |
nms (0.855432) | |
fli (0.811524) | |
spl (0.715922) | |
eli (0.607257) | |
cte (0.58548) | |
hlv (0.557025) | |
gul (0.532765) | |
cut (0.509771) | |
pgl (0.473934) | |
mas (0.42061) | |
aor (0.390549) | |
bla (0.373042) | |
che (0.272628) | |
ova (0.258264) | |
cbe (0.239234) | |
tes (0.207814) | |
ldo (0.194005) | |
sin (0.174948) | |
rec (0.17307) | |
ctl (0.153069) | |
liv (0.146284) | |
lin (0.145603) | |
ssp (0.13552) | |
ste (0.135208) | |
cbr (0.127975) |