Non-Coding RNA Search

Ss1.1-rlnt26c_i12.5

Sequence:


               
               GTGGTTCAGACCGGAACAGACCAATAAAGAGAACTTTAGTGTTTAAAAAAATTTTTTTTA
ATAAATTACCTATTTAAATAAATATTAAATTTTCCAAAGCTTAGAATTTAGGTCATGATG
CTAGTGATGAAGATAGTGCAAGTGATGGAAAAAAAATGGTCTCAGTAACGGTAACTATAT
CCTTAGGATTTTTTTTTTTTTTAATGTATAAGGTCAGATCTTTCCCAAATTTCCTACTTT
TTCTGAAATAATTTTATATTTAAAGTTAAACTTAAAAGATCATCTTCAAGCCTACTATAA
TTTTTAATCTGTTGCTACATATTTAGTAAAGACCCATGTAATTACCTTAAAAAGTACTTA
GGATATCTTTGAGGTAAATGGTGCTACATCACTTCACAGTATTAATGTAAAATGATTGCA
GCTACTTTTCCTTTCTAGATAGCTGTTATGTATAGTTCATATTAATTTCTCCCGCCTTTT
ATTTGGATTGTCTTATTTCCTAGTTGTATACACAAGCCTCATTATCTGTCTGGAATAAGT
AATCAAATAAACTTGCTTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTTCAGACCGGAACAGACCAATAAAGAGAACTTTAGTGTTTAAAAAAATTTTTTTTA
ATAAATTACCTATTTAAATAAATATTAAATTTTCCAAAGCTTAGAATTTAGGTCATGATG
CTAGTGATGAAGATAGTGCAAGTGATGGAAAAAAAATGGTCTCAGTAACGGTAACTATAT
CCTTAGGATTTTTTTTTTTTTTAATGTATAAGGTCAGATCTTTCCCAAATTTCCTACTTT
TTCTGAAATAATTTTATATTTAAAGTTAAACTTAAAAGATCATCTTCAAGCCTACTATAA
TTTTTAATCTGTTGCTACATATTTAGTAAAGACCCATGTAATTACCTTAAAAAGTACTTA
GGATATCTTTGAGGTAAATGGTGCTACATCACTTCACAGTATTAATGTAAAATGATTGCA
GCTACTTTTCCTTTCTAGATAGCTGTTATGTATAGTTCATATTAATTTCTCCCGCCTTTT
ATTTGGATTGTCTTATTTCCTAGTTGTATACACAAGCCTCATTATCTGTCTGGAATAAGT
AATCAAATAAACTTGCTTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               311-470, - strand, RNAz p=0.978515

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-470, - strand, RNAz p=0.978515

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               328-468, DB302856 BRAMY2 Homo sapiens cDNA clone BRAMY2043322 3', mRNA 
(dbj|DB302856.1|), blast E-value=3e-27, identity=87.94% 
               

               
               328-468, AJ709146 CMPD01 Homo sapiens cDNA clone CMPD04487, mRNA sequence 
(emb|AJ709146.1|), blast E-value=3e-27, identity=87.94% 
               

               
               328-468, tf28d09.x1 NCI_CGAP_Brn23 Homo sapiens cDNA clone IMAGE 
(gb|AI419423.1|), blast E-value=3e-27, identity=87.94% 
               

               
               346-468, ts37g01.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone IMAGE (gb|AI623592.1|), 
blast E-value=1e-23, identity=88.62% 
               

               
               328-468, 602343016F1 NIH_MGC_89 Homo sapiens cDNA clone IMAGE (gb|BG164145.1|), 
blast E-value=5e-23, identity=87.32% 
               

               
               328-468, yi20a07.s1 Soares placenta Nb2HP Homo sapiens cDNA clone 
(gb|R62137.1|), blast E-value=3e-27, identity=87.94%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               328-468, DB302856 BRAMY2 Homo sapiens cDNA clone BRAMY2043322 3', mRNA 
(dbj|DB302856.1|), blast E-value=3e-27, identity=87.94% 
               

               
               328-468, AJ709146 CMPD01 Homo sapiens cDNA clone CMPD04487, mRNA sequence 
(emb|AJ709146.1|), blast E-value=3e-27, identity=87.94% 
               

               
               328-468, tf28d09.x1 NCI_CGAP_Brn23 Homo sapiens cDNA clone IMAGE 
(gb|AI419423.1|), blast E-value=3e-27, identity=87.94% 
               

               
               346-468, ts37g01.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone IMAGE (gb|AI623592.1|), 
blast E-value=1e-23, identity=88.62% 
               

               
               328-468, 602343016F1 NIH_MGC_89 Homo sapiens cDNA clone IMAGE (gb|BG164145.1|), 
blast E-value=5e-23, identity=87.32% 
               

               
               328-468, yi20a07.s1 Soares placenta Nb2HP Homo sapiens cDNA clone 
(gb|R62137.1|), blast E-value=3e-27, identity=87.94%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-565, gnl|bosTau2|chr11 (29826023-29826594)
               

               
               1-565, gnl|Hg17|chr2 (60939984-60940870)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-565, gnl|bosTau2|chr11 (29826023-29826594)
               

               
               1-565, gnl|Hg17|chr2 (60939984-60940870)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lnt (0.284616)
               

               
               mas (0.210305)
               

               
               liv (0.146284)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.284616)
               

               
               mas (0.210305)
               

               
               liv (0.146284)

	328-468, DB302856 BRAMY2 Homo sapiens cDNA clone BRAMY2043322 3', mRNA (dbj\|DB302856.1\|), blast E-value=3e-27, identity=87.94%
	328-468, AJ709146 CMPD01 Homo sapiens cDNA clone CMPD04487, mRNA sequence (emb\|AJ709146.1\|), blast E-value=3e-27, identity=87.94%
	328-468, tf28d09.x1 NCI_CGAP_Brn23 Homo sapiens cDNA clone IMAGE (gb\|AI419423.1\|), blast E-value=3e-27, identity=87.94%
	346-468, ts37g01.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone IMAGE (gb\|AI623592.1\|), blast E-value=1e-23, identity=88.62%
	328-468, 602343016F1 NIH_MGC_89 Homo sapiens cDNA clone IMAGE (gb\|BG164145.1\|), blast E-value=5e-23, identity=87.32%
	328-468, yi20a07.s1 Soares placenta Nb2HP Homo sapiens cDNA clone (gb\|R62137.1\|), blast E-value=3e-27, identity=87.94%

	1-565, gnl\|bosTau2\|chr11 (29826023-29826594)
	1-565, gnl\|Hg17\|chr2 (60939984-60940870)