Non-Coding RNA Search

Ss1.1-rlnt28c_o19.5

Sequence:


               
               GGAGCTGTGCCGAGCCCACATCGAGAGGCTCCGGCAGGAGCCCGAAGGTGCTGGAGCCAA
GTCTCCAACGTGCCAGAAACTGTCTCCCAAGTGGTGCTTCCTGGATGCCACCACTGCCAG
CCGCTTCTACAGAATCGACAGGGCCCAGGAACACCTCAACTATGTGACCGAGATCGCACA
GGACGAGATTTATATCCTGGACCCTGAGCTGCTGGGGGCGTCTGCCCGGCCTGACCTCCC
AACCCCCACCTCCCCTCTCCCCACCTCGCCCTGCTCACCCACGCCCCGGTCACGGCCAGG
GGATGCTGCACCCCCTACAGGTGAAGAGTTGATCGAGGCCGCCAGGAGGAATGATTTCTG
TAAGCTCCAGGAGCTGCACCGAGCCGGGGGTGACCTCCTGCACCGTGACGAGCGGAGCCG
CACGCTTCTGCACCATGCTGTCAGCACGGGCAGCAAGGAGGTGGTTCGCTACCTGCTGGA
CCATGCCCCCGCAGAGATCCTTGATGCTGTGGAGGAAAATGGAGAGACCTGTCTGCACCA
GGCCGCGGCCCTGGGCCAGCGCACCATCTGCCACTACATCGTGGAGGCCGGGGCCTCTCT
CATGAAGACAGACCAGCAGGGTGACACGCCCCGGCAGCGGGCTGAGAAGGCTCAGGACAC
GGAACTGGCCGCATACTTGGAGAACCGGCAGCACTACCAGATGATCCAGAGGGAGGACCA
GGAGACAGCTGTGTAGCTGTGAGGCCAAGGCCAGAGCAGCAGCAGGGACAAGGACTGGGT
CGGGCGGCAGAAGGATGAGCCCCTCCTCACCCACCTCACTGCCACATTCCAGTCGGAAGT
CGCAGAGGGACCCAGGCCCGAGGGACCCAGGCCCCAGGGCCGAGCCCCGTGCTGCCCCCC
TGAGGAGCTGCCCAGATCAGGGCTGGACTCTGAGAAGCTGGGGTGGGGGGGCGGTCTCAC
CCATTGCGCTGAGGCTCCAGCATAACTCAGAGGTTCAACGGGGAAACAGGAGACTGGGCT
GGGCTGGGCTGGGCAGGCCTTTGGGGGGACGGGAGCAGCCCTCACCCTCACTGCAGGGGC
TGCCCTGGCGTTTAGGGGGACAAAGAGGGCAGAGGGGCTCGAGGCCCTATCAGGGGGCCT
TCAGGAAAAGGCTTCTGAAGATTCCCAGGCCTCTGGGACCCCCACTCAGGCTCCTGGGAG
CTTGGGCCTGGTCTCCTGCCCTGATCCCAACCCTCCCGCCGGCCTCCTCCTGGAAACAAG
GAGCCTGCTGCATCTGCCTGCGGCTGCCTGCCCTGCTTAGCACCTACCCCGTGACCCTCC
TCTCTACCCGGTCATTTCACCTCCGACTGTGTGGCCCGGGGGTGGGGTGGGGCTCTCACG
GTGACATGTTTACAGCTGGGTGTGACTCAGTAAAATGGATTTTTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCTGTGCCGAGCCCACATCGAGAGGCTCCGGCAGGAGCCCGAAGGTGCTGGAGCCAA
GTCTCCAACGTGCCAGAAACTGTCTCCCAAGTGGTGCTTCCTGGATGCCACCACTGCCAG
CCGCTTCTACAGAATCGACAGGGCCCAGGAACACCTCAACTATGTGACCGAGATCGCACA
GGACGAGATTTATATCCTGGACCCTGAGCTGCTGGGGGCGTCTGCCCGGCCTGACCTCCC
AACCCCCACCTCCCCTCTCCCCACCTCGCCCTGCTCACCCACGCCCCGGTCACGGCCAGG
GGATGCTGCACCCCCTACAGGTGAAGAGTTGATCGAGGCCGCCAGGAGGAATGATTTCTG
TAAGCTCCAGGAGCTGCACCGAGCCGGGGGTGACCTCCTGCACCGTGACGAGCGGAGCCG
CACGCTTCTGCACCATGCTGTCAGCACGGGCAGCAAGGAGGTGGTTCGCTACCTGCTGGA
CCATGCCCCCGCAGAGATCCTTGATGCTGTGGAGGAAAATGGAGAGACCTGTCTGCACCA
GGCCGCGGCCCTGGGCCAGCGCACCATCTGCCACTACATCGTGGAGGCCGGGGCCTCTCT
CATGAAGACAGACCAGCAGGGTGACACGCCCCGGCAGCGGGCTGAGAAGGCTCAGGACAC
GGAACTGGCCGCATACTTGGAGAACCGGCAGCACTACCAGATGATCCAGAGGGAGGACCA
GGAGACAGCTGTGTAGCTGTGAGGCCAAGGCCAGAGCAGCAGCAGGGACAAGGACTGGGT
CGGGCGGCAGAAGGATGAGCCCCTCCTCACCCACCTCACTGCCACATTCCAGTCGGAAGT
CGCAGAGGGACCCAGGCCCGAGGGACCCAGGCCCCAGGGCCGAGCCCCGTGCTGCCCCCC
TGAGGAGCTGCCCAGATCAGGGCTGGACTCTGAGAAGCTGGGGTGGGGGGGCGGTCTCAC
CCATTGCGCTGAGGCTCCAGCATAACTCAGAGGTTCAACGGGGAAACAGGAGACTGGGCT
GGGCTGGGCTGGGCAGGCCTTTGGGGGGACGGGAGCAGCCCTCACCCTCACTGCAGGGGC
TGCCCTGGCGTTTAGGGGGACAAAGAGGGCAGAGGGGCTCGAGGCCCTATCAGGGGGCCT
TCAGGAAAAGGCTTCTGAAGATTCCCAGGCCTCTGGGACCCCCACTCAGGCTCCTGGGAG
CTTGGGCCTGGTCTCCTGCCCTGATCCCAACCCTCCCGCCGGCCTCCTCCTGGAAACAAG
GAGCCTGCTGCATCTGCCTGCGGCTGCCTGCCCTGCTTAGCACCTACCCCGTGACCCTCC
TCTCTACCCGGTCATTTCACCTCCGACTGTGTGGCCCGGGGGTGGGGTGGGGCTCTCACG
GTGACATGTTTACAGCTGGGTGTGACTCAGTAAAATGGATTTTTTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32425798|gb|AAH08018.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32425798|gb|AAH08018.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               5-282, - strand, RNAz p=0.963732
               

               
               898-1016, + strand, RNAz p=0.54051
               

               
               1091-1248, - strand, RNAz p=0.999821

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-282, - strand, RNAz p=0.963732
               

               
               898-1016, + strand, RNAz p=0.54051
               

               
               1091-1248, - strand, RNAz p=0.999821

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB209635, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB209635, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               5-621, gnl|bosTau2|chr13 (7132936-7132336)
               

               
               5-621, gnl|Hg17|chr13 (43442619-43443240)
               


               
               860-1427, gnl|bosTau2|chr15 (48221899-48222439)
               

               
               860-1427, gnl|Hg17|chr11 (46358168-46358675)
               

               
               860-1427, gnl|Mm7|chr2 (91784039-91783544)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-621, gnl|bosTau2|chr13 (7132936-7132336)
               

               
               5-621, gnl|Hg17|chr13 (43442619-43443240)
               


               
               860-1427, gnl|bosTau2|chr15 (48221899-48222439)
               

               
               860-1427, gnl|Hg17|chr11 (46358168-46358675)
               

               
               860-1427, gnl|Mm7|chr2 (91784039-91783544)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               lnt (0.284616)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.284616)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	5-282, - strand, RNAz p=0.963732
	898-1016, + strand, RNAz p=0.54051
	1091-1248, - strand, RNAz p=0.999821

	5-621, gnl\|bosTau2\|chr13 (7132936-7132336)
	5-621, gnl\|Hg17\|chr13 (43442619-43443240)

	860-1427, gnl\|bosTau2\|chr15 (48221899-48222439)
	860-1427, gnl\|Hg17\|chr11 (46358168-46358675)
	860-1427, gnl\|Mm7\|chr2 (91784039-91783544)

	lnt (0.284616)
	mas (0.210305)
	fli (0.202881)
	fcc (0.197785)
	nlu (0.191681)
	fty (0.17584)
	fbs (0.175346)
	hyp (0.142837)
	ute (0.132784)
	cly (0.120642)
	clu (0.119646)
	ebs (0.118301)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)