Non-Coding RNA Search

Ss1.1-rlnt28c_p10.5

Sequence:


               
               GGGAAATGGAAAACATGGATAATAGTTCCATGGGCTTGATACTACTGGCTGAGTTTGCAA
TGGCAGGTGGAACCTTAACTATTGAGGGAGTTTGCAGATACCTCAGGATTCGTGACAATG
CCTTTAAAGATCCAGGAGAGATGTTCAGCTACTAGGAACTGCTAGCAAGTATAGCGCGAA
TGGCTCCGAGCTCAGACACTCTACAGCTGAGAGTAGACACTTGTGGTATGTGGAGTACAG
ATAAGCCAGGGGCAGGCCACGGCACCCTCCATGAAAGCTAGGAGGGAGTGAAGTTTGAGT
GACCATCGCAAGGAAGGAGGCAGACCAGAGTAAGGCACACCTGACTCTTAGGACTAGCAG
TCAGAACCAGGAGAAAAGGTTTTATTGCTATGCTGGTAGGTAAGAACAGATTTTACTTAC
ATCCATATAGTTCTAAAGTCCAGTTTTCTCTTAAATTGTCCCTAATGTGTTGAGCCAAAA
CTAGTCCAGTTAAGCTGATCTTGGTTTTTCTGGAGATAATTGGCTTTTAATTTGACACCC
TATTCTTGGTGGCTCCCAATTGAGGGAAGTGAGCACTTTAATCATTTCTGTGATAATTTC
TACCCTTTTAATTTGTTTTCTACCTTCTTTTGACCTATTATCTTAAAACAGTGGCTCAAA
GTAATGCATTAGAATCTTTCCCCAAAATTGTGGTGGGAGGGTGGGTGGACCATTAATGGG
GGTGGGAGGATTTAGCCTGAGATGGAACTTGTCTCAGAGAAAAGCTAGTTCTAAAGGCCC
TTTACTTTTCTAGGGAGGAGTCTGCTACTACAGGCTTATCAGCTCTTAAAAAACCGGGAA
CTCTTCAGTCCAAGCTCATGGCTAAAAGGAACATCCTTAAGAGGACATTTCTCTGAGCCA
CTCACTGTTCATTTTAACTGCTATGCAGTAATCATTAGCTGCTATGCAGCTGAAATTAAT
CAATTCAGTTTTGTGAATGGACTTTGGAAAATAAAGACACGTTTAACTTGGAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAATGGAAAACATGGATAATAGTTCCATGGGCTTGATACTACTGGCTGAGTTTGCAA
TGGCAGGTGGAACCTTAACTATTGAGGGAGTTTGCAGATACCTCAGGATTCGTGACAATG
CCTTTAAAGATCCAGGAGAGATGTTCAGCTACTAGGAACTGCTAGCAAGTATAGCGCGAA
TGGCTCCGAGCTCAGACACTCTACAGCTGAGAGTAGACACTTGTGGTATGTGGAGTACAG
ATAAGCCAGGGGCAGGCCACGGCACCCTCCATGAAAGCTAGGAGGGAGTGAAGTTTGAGT
GACCATCGCAAGGAAGGAGGCAGACCAGAGTAAGGCACACCTGACTCTTAGGACTAGCAG
TCAGAACCAGGAGAAAAGGTTTTATTGCTATGCTGGTAGGTAAGAACAGATTTTACTTAC
ATCCATATAGTTCTAAAGTCCAGTTTTCTCTTAAATTGTCCCTAATGTGTTGAGCCAAAA
CTAGTCCAGTTAAGCTGATCTTGGTTTTTCTGGAGATAATTGGCTTTTAATTTGACACCC
TATTCTTGGTGGCTCCCAATTGAGGGAAGTGAGCACTTTAATCATTTCTGTGATAATTTC
TACCCTTTTAATTTGTTTTCTACCTTCTTTTGACCTATTATCTTAAAACAGTGGCTCAAA
GTAATGCATTAGAATCTTTCCCCAAAATTGTGGTGGGAGGGTGGGTGGACCATTAATGGG
GGTGGGAGGATTTAGCCTGAGATGGAACTTGTCTCAGAGAAAAGCTAGTTCTAAAGGCCC
TTTACTTTTCTAGGGAGGAGTCTGCTACTACAGGCTTATCAGCTCTTAAAAAACCGGGAA
CTCTTCAGTCCAAGCTCATGGCTAAAAGGAACATCCTTAAGAGGACATTTCTCTGAGCCA
CTCACTGTTCATTTTAACTGCTATGCAGTAATCATTAGCTGCTATGCAGCTGAAATTAAT
CAATTCAGTTTTGTGAATGGACTTTGGAAAATAAAGACACGTTTAACTTGGAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               326-443, - strand, RNAz p=0.995724
               

               
               595-784, + strand, RNAz p=0.99638

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               326-443, - strand, RNAz p=0.995724
               

               
               595-784, + strand, RNAz p=0.99638

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               639-749, + strand, RNAmicro p=0.987082

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               639-749, + strand, RNAmicro p=0.987082

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-867, gnl|bosTau2|chr5 (16531754-16530896)
               

               
               8-867, gnl|Hg17|chr12 (52965955-52966781)
               

               
               8-867, gnl|Mm7|chr15 (103234633-103235464)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-867, gnl|bosTau2|chr5 (16531754-16530896)
               

               
               8-867, gnl|Hg17|chr12 (52965955-52966781)
               

               
               8-867, gnl|Mm7|chr15 (103234633-103235464)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               nbm (0.198649)
               

               
               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.198649)
               

               
               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	326-443, - strand, RNAz p=0.995724
	595-784, + strand, RNAz p=0.99638

	8-867, gnl\|bosTau2\|chr5 (16531754-16530896)
	8-867, gnl\|Hg17\|chr12 (52965955-52966781)
	8-867, gnl\|Mm7\|chr15 (103234633-103235464)

	nbm (0.198649)
	nlu (0.191681)
	rec (0.17307)
	fhi (0.169578)
	cje (0.165235)
	cag (0.151194)
	lnt (0.142308)
	nca (0.136874)
	ova (0.129132)
	ese (0.126502)
	bla (0.124347)
	eru (0.120048)
	ecc (0.115035)
	spc (0.113366)
	jej (0.0989218)