Non-Coding RNA Search

Ss1.1-rlnt29c_j11.5

Sequence:


               
               TGACACATTAGTGGTCCTGGATCATAGTTGATGATGCAGGAACAAAGCCTTACCCAGTCA
TGACTTCACTGAGTTTTTACCACGTGAAGAAATGAAGTTCAAGAGTCTATGTGAGGGTCC
AATCTTAGACTGATATAAGGCATCTTGCTCAGTTCTAGCTCCTCTATTCCTAGACTACCT
AATAAGGTCCTCAGTAGGTGTTTTAAGGAAATTACTCCTATGGACTAATTGGTATAATCG
TATTTTGGTTTTTGTTAAGATCCCGGTCCAGGTCGAGATCAAGATCCAGGTCTCTTTCAC
GACCAAGAAGCAGGTAGGGTAACAATCTCACTGATGTTCTTCTAGTTATATGGCACCAAT
ATCCAAAGAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACACATTAGTGGTCCTGGATCATAGTTGATGATGCAGGAACAAAGCCTTACCCAGTCA
TGACTTCACTGAGTTTTTACCACGTGAAGAAATGAAGTTCAAGAGTCTATGTGAGGGTCC
AATCTTAGACTGATATAAGGCATCTTGCTCAGTTCTAGCTCCTCTATTCCTAGACTACCT
AATAAGGTCCTCAGTAGGTGTTTTAAGGAAATTACTCCTATGGACTAATTGGTATAATCG
TATTTTGGTTTTTGTTAAGATCCCGGTCCAGGTCGAGATCAAGATCCAGGTCTCTTTCAC
GACCAAGAAGCAGGTAGGGTAACAATCTCACTGATGTTCTTCTAGTTATATGGCACCAAT
ATCCAAAGAGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-211, - strand, RNAz p=0.946368

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-211, - strand, RNAz p=0.946368

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               117-368, gnl|bosTau2|chr11 (16014798-16015040)
               

               
               117-368, gnl|Hg17|chr2 (38885703-38885431)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-368, gnl|bosTau2|chr11 (16014798-16015040)
               

               
               117-368, gnl|Hg17|chr2 (38885703-38885431)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cmu (0.186393)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               lnt (0.142308)

	117-368, gnl\|bosTau2\|chr11 (16014798-16015040)
	117-368, gnl\|Hg17\|chr2 (38885703-38885431)