Non-Coding RNA Search

Ss1.1-rlnt29c_k6.5

Sequence:


               
               GACACGAGGGAACTACGAAACATGACAAACAAAACTCACCCACAAAACTATCTAAACGTT
GCCGGCATGGAGGGGACGCCCCAGGAAGTGACAGACGTCTCGGCGGACTGGATTTCTGTC
CAGGGTTGGTCACAGGTGCTTTTGCCAAGGACGCAGAGCCTGCTTTCCGAAGGCTGCGCG
GACGCCGACAGGCTCTGCCGGGGCGCGCAGGAGCCAGGGATGTCTGGAAGCCGCATCTCC
TTTGCCGTAGTGTTTAAGTCTATACAGAAACCTTCCTGAGAGCCTTAAGTGGATTTTTTT
TTACACCATAAAGTGATTATTAAGCTTTCCTTTTTACTCCTTGCCTAGCTTTTTTTTTTT
TTTTTTTTTCCTTTTTTTAATTATCTCTTGGATGACATTGACACCGGTAACACCAGGCTG
CTGTAACAGTCAGGACGATGGGACGGTATCTTTCCTAGCAGGATGCGAACGAATGAGATG
TATTAAAATAAACATGGTATACCCACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACACGAGGGAACTACGAAACATGACAAACAAAACTCACCCACAAAACTATCTAAACGTT
GCCGGCATGGAGGGGACGCCCCAGGAAGTGACAGACGTCTCGGCGGACTGGATTTCTGTC
CAGGGTTGGTCACAGGTGCTTTTGCCAAGGACGCAGAGCCTGCTTTCCGAAGGCTGCGCG
GACGCCGACAGGCTCTGCCGGGGCGCGCAGGAGCCAGGGATGTCTGGAAGCCGCATCTCC
TTTGCCGTAGTGTTTAAGTCTATACAGAAACCTTCCTGAGAGCCTTAAGTGGATTTTTTT
TTACACCATAAAGTGATTATTAAGCTTTCCTTTTTACTCCTTGCCTAGCTTTTTTTTTTT
TTTTTTTTTCCTTTTTTTAATTATCTCTTGGATGACATTGACACCGGTAACACCAGGCTG
CTGTAACAGTCAGGACGATGGGACGGTATCTTTCCTAGCAGGATGCGAACGAATGAGATG
TATTAAAATAAACATGGTATACCCACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               15-507, gnl|bosTau2|chr25 (40267395-40266917)
               

               
               15-507, gnl|Hg17|chr7_random (645199-644639)
               

               
               15-507, gnl|Mm7|chr5 (137949017-137948500)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-507, gnl|bosTau2|chr25 (40267395-40266917)
               

               
               15-507, gnl|Hg17|chr7_random (645199-644639)
               

               
               15-507, gnl|Mm7|chr5 (137949017-137948500)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sag (0.182715)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

	15-507, gnl\|bosTau2\|chr25 (40267395-40266917)
	15-507, gnl\|Hg17\|chr7_random (645199-644639)
	15-507, gnl\|Mm7\|chr5 (137949017-137948500)

	sag (0.182715)
	lnt (0.142308)
	cst (0.140036)
	ute (0.132784)
	ese (0.126502)