Non-Coding RNA Search

Ss1.1-rlnt30c_b15.5

Sequence:


               
               GGAAAGGGCAGGGNGCTACAGCTGAGACAAAGTTCCCTTGGCCGGGCAGGCGCCTGGGGT
CAAGGGGCAGAGAACTCCGCTTCCTTCCCAAAGGCCTCCCAGGCCATTCCCGCCCTCAGC
CTCGCCATGACCTTGACCGTGACTGCTCTGCCTTCACCTCGCAGGCGCCTTGCAACTCCC
TGACCTCACACCCTCCTCCACGTGGCCAGGAGGGAGAGGGGTCCCCTCAGGCCCTGCGTG
CCACGCAGACTCCCCTGCGTGGAACCAGGGATGGGAGGAGAAAGAGGGCCAGACAGGACC
CTAGGGGACTCGCTCCATCCTTGACGGGTGTCTCTGAAACTGGGCCATCTTCAGCCTGCG
CCTGGTGTGTCCCAGCTCGAAGGGTGGGGCTGGGAATACGACAGGTTTGGGTGCCAAGTC
TGGGTCTCCACCTGTAGCAGGTGGGATGCAGCCTTTGGGGACACCGCTCGGAGAGCCCCA
CTGTCCCCCTGGGCGGAGCTCTCCCATCGGTCACACCCCATCTCCCCTCCAGGACCCGCT
GGACGCGGCCGGGTACTACCAGCTGGCCCTGGCGGCAGCCGTGGACCTGGGCAACAAGAA
GGCACAGATGAAGATCTATACGCGCCTGGCCGCCATCTACCACAACTTCCTCCTGGACCG
CGAGAAGTCCCTCTTGTTCTACCAGAAGGCCCGGACCTTCGCCACCGAGCTCAACATCCG
CCGGGGCCACCTGGCCCCTGGGCGGTGCTGCGGGCGGGCACCCTGGCTGGTCCCCGGGCC
CCCGCCCTGAGCCCTGAGAGCCGTGGTCTCCTTCTGTGCCTGTGTTTCCAGCGGGACGCG
CCTTCTGGGAAGAGGAGGCATGAGGGCAGGGGTCAGATAGTAATAAATATTTTTGCAGAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGGGCAGGGNGCTACAGCTGAGACAAAGTTCCCTTGGCCGGGCAGGCGCCTGGGGT
CAAGGGGCAGAGAACTCCGCTTCCTTCCCAAAGGCCTCCCAGGCCATTCCCGCCCTCAGC
CTCGCCATGACCTTGACCGTGACTGCTCTGCCTTCACCTCGCAGGCGCCTTGCAACTCCC
TGACCTCACACCCTCCTCCACGTGGCCAGGAGGGAGAGGGGTCCCCTCAGGCCCTGCGTG
CCACGCAGACTCCCCTGCGTGGAACCAGGGATGGGAGGAGAAAGAGGGCCAGACAGGACC
CTAGGGGACTCGCTCCATCCTTGACGGGTGTCTCTGAAACTGGGCCATCTTCAGCCTGCG
CCTGGTGTGTCCCAGCTCGAAGGGTGGGGCTGGGAATACGACAGGTTTGGGTGCCAAGTC
TGGGTCTCCACCTGTAGCAGGTGGGATGCAGCCTTTGGGGACACCGCTCGGAGAGCCCCA
CTGTCCCCCTGGGCGGAGCTCTCCCATCGGTCACACCCCATCTCCCCTCCAGGACCCGCT
GGACGCGGCCGGGTACTACCAGCTGGCCCTGGCGGCAGCCGTGGACCTGGGCAACAAGAA
GGCACAGATGAAGATCTATACGCGCCTGGCCGCCATCTACCACAACTTCCTCCTGGACCG
CGAGAAGTCCCTCTTGTTCTACCAGAAGGCCCGGACCTTCGCCACCGAGCTCAACATCCG
CCGGGGCCACCTGGCCCCTGGGCGGTGCTGCGGGCGGGCACCCTGGCTGGTCCCCGGGCC
CCCGCCCTGAGCCCTGAGAGCCGTGGTCTCCTTCTGTGCCTGTGTTTCCAGCGGGACGCG
CCTTCTGGGAAGAGGAGGCATGAGGGCAGGGGTCAGATAGTAATAAATATTTTTGCAGAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34535547|dbj|BAC87357.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34535547|dbj|BAC87357.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               487-743, gnl|bosTau2|chr6 (65518835-65519092)
               

               
               487-743, gnl|Hg17|chr4 (8360469-8360742)
               

               
               487-743, gnl|Mm7|chr5 (34759974-34759752)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               487-743, gnl|bosTau2|chr6 (65518835-65519092)
               

               
               487-743, gnl|Hg17|chr4 (8360469-8360742)
               

               
               487-743, gnl|Mm7|chr5 (34759974-34759752)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               lnt (0.142308)

	487-743, gnl\|bosTau2\|chr6 (65518835-65519092)
	487-743, gnl\|Hg17\|chr4 (8360469-8360742)
	487-743, gnl\|Mm7\|chr5 (34759974-34759752)