Non-Coding RNA Search

Ss1.1-rlnt30c_p23.5

Sequence:


               
               CAGCTCATCCCCAAGACCAAAATCCCAGCCCACACCCGCTACGCCCTGCAGTGCCGCTTC
AGCCCAGACTCCACGCTCCTTGCCACCTGCTCGGCTGACCAGACGTGCAAGATCTGGAGG
ACGTCCAACTTCTCCCTGATGACGGAACTGAGCATCAAGAGCAGCAACCCCGGAGAGTCC
TCCCGAGGCTGGATGTGGGGCTGCGCCTTCTCGGGGGACTCCCAGTACATCGTCACTGCT
TCCTCTGATAACCTGGCCCGGCTCTGGTGCGTGGAGACGGGCGAGATCAAGAGAGAGTAC
GGCGGCCACCAGAAAGCTGTCGTCTGTCTGGCCTTCAACGACAGTGTGCTGGGCTAGCCT
GTGTGCCCTTGGGATTGTGGGCGGCCGCCCCGATGGCACCCGCAGGATGTGTCCGTCCAG
CTGCCCAGGTCAGCCTAGGCCAGCTGGACCTGACTGACCTGCCCCGGCCCCCTCGGCCAG
ACCCGCCGGGCCCAATCGGTCCGCCCTGGGACCCTCCAGCCCCGGCTGCCTCTCCGGATG
TGCCCGGGCTCAGGAGACCCACCCCAGCCACCGGCGTTCCCTTCGGAAATTCCGGACCCA
CAAGGCCTAGAGCTCCGGAGAGGGATCGGAGGCGCCTGCCCGTCCCCAAACCAGCGCCTC
CCCCTTTCCTTCCTTGCCCCTCACTTGTCCCCTGAGGCCGCAGACAACACCATCATGGCT
GCTGGAGTGGTTTATTAGTGCTGCCGGTGGTCGCCCTGTCTGGGACTGGTGACAGGGCCA
GCCAGGCGCTTAGTCCGGGAGGTAATAAAAGCAGACTGACACGCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTCATCCCCAAGACCAAAATCCCAGCCCACACCCGCTACGCCCTGCAGTGCCGCTTC
AGCCCAGACTCCACGCTCCTTGCCACCTGCTCGGCTGACCAGACGTGCAAGATCTGGAGG
ACGTCCAACTTCTCCCTGATGACGGAACTGAGCATCAAGAGCAGCAACCCCGGAGAGTCC
TCCCGAGGCTGGATGTGGGGCTGCGCCTTCTCGGGGGACTCCCAGTACATCGTCACTGCT
TCCTCTGATAACCTGGCCCGGCTCTGGTGCGTGGAGACGGGCGAGATCAAGAGAGAGTAC
GGCGGCCACCAGAAAGCTGTCGTCTGTCTGGCCTTCAACGACAGTGTGCTGGGCTAGCCT
GTGTGCCCTTGGGATTGTGGGCGGCCGCCCCGATGGCACCCGCAGGATGTGTCCGTCCAG
CTGCCCAGGTCAGCCTAGGCCAGCTGGACCTGACTGACCTGCCCCGGCCCCCTCGGCCAG
ACCCGCCGGGCCCAATCGGTCCGCCCTGGGACCCTCCAGCCCCGGCTGCCTCTCCGGATG
TGCCCGGGCTCAGGAGACCCACCCCAGCCACCGGCGTTCCCTTCGGAAATTCCGGACCCA
CAAGGCCTAGAGCTCCGGAGAGGGATCGGAGGCGCCTGCCCGTCCCCAAACCAGCGCCTC
CCCCTTTCCTTCCTTGCCCCTCACTTGTCCCCTGAGGCCGCAGACAACACCATCATGGCT
GCTGGAGTGGTTTATTAGTGCTGCCGGTGGTCGCCCTGTCTGGGACTGGTGACAGGGCCA
GCCAGGCGCTTAGTCCGGGAGGTAATAAAAGCAGACTGACACGCAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61866884|ref|XP_615265.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61866884|ref|XP_615265.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               59-236, gnl|bosTau2|chr25 (5055199-5055022)
               

               
               59-236, gnl|Hg17|chr16 (2198441-2198613)
               

               
               59-236, gnl|Mm7|chr17 (22657048-22656873)
               


               
               238-786, gnl|bosTau2|chr25 (5054931-5054405)
               

               
               238-786, gnl|Hg17|chr16 (2198760-2199333)
               

               
               238-786, gnl|Mm7|chr17 (22656777-22656222)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-236, gnl|bosTau2|chr25 (5055199-5055022)
               

               
               59-236, gnl|Hg17|chr16 (2198441-2198613)
               

               
               59-236, gnl|Mm7|chr17 (22657048-22656873)
               


               
               238-786, gnl|bosTau2|chr25 (5054931-5054405)
               

               
               238-786, gnl|Hg17|chr16 (2198760-2199333)
               

               
               238-786, gnl|Mm7|chr17 (22656777-22656222)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mas (0.210305)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)

	59-236, gnl\|bosTau2\|chr25 (5055199-5055022)
	59-236, gnl\|Hg17\|chr16 (2198441-2198613)
	59-236, gnl\|Mm7\|chr17 (22657048-22656873)

	238-786, gnl\|bosTau2\|chr25 (5054931-5054405)
	238-786, gnl\|Hg17\|chr16 (2198760-2199333)
	238-786, gnl\|Mm7\|chr17 (22656777-22656222)