Non-Coding RNA Search

Ss1.1-rlnt31c_a19.5

Sequence:


               
               TAGATTTTTCTAAGAAAATGTATTATGATGTTAGAGAAAATATATTTAAAAAGTACAATT
CATGATGGTGGTATCAGACTCTGTCAGACATCTTAGGACACAGACCTAAGTGTGAAGGGC
ATACTGTGTTTTCTTCTTATAACTGTATTATTAGAACCACCATTTAGAGAGAGATGAACC
AAGAAATCTATGTGGAATTTGTAAAAAGAAATAGATTATATAGAAGAATTAAGCAAACAA
TTCCAAAAAACTAAGAACTAAGATTATGCTTAGTTTTACATTTTAAGTGTTTGAAATCGG
TGATGGTCTTTGTCGTTTATTAGCACTCATAGAATGTTGCACGAATGTCTGACTTAGCAT
TTGGATGAGTGTGCCATCTTTAGTGATTCAGGCAAGGGAACAGAGAATTGCTATACTAAC
ATTTTCCTAACTCTCTTACTATGGATGACGATGATGATGAAGGATTCAGCTTTAACCCAT
TAAAAATAGAGGTCTTTGTACAGACTCTGCTACACTTAGCAGCCAAGTCATTCAGCCACT
CCTTCAGCGCTCTTGCAAAGTTTCATGAAGTCTTCAAAACCCTAGCTGAAAGTGATGAAG
GAAAATTACATGTTCTAAGAGTCATGTTTGAGGTCTGGCGGAACCATCCACAGATGATTG
CTGTACTAGTAGATAAGATGATTCGTACGCAGATTGTTGACTGTGCTGCAGTAGCAAACT
GGATCTTCTCTTCAGAACTATCTCGTGACTTTACCAGATTGTTTGTTTGGGAAATCCTGC
ACTCCACAATTCGTAAGATGAACAAACATGTTCTGAAGATTCAGAAAGAGCTAGAAGAAG
CTAAAGAAAAACTCGCAAGGCAACACAAACGGCGAAGTGATGACGACGACAGAAGCAGTG
ACAGGAAAGATGGGGCTCTTGAGGAACAAATAGAAAGACTGCAGGAAAAAGTGGAATCTG
CTCAGAGTGAACAAAAGAATCTCTTCCTTGTCATATTTCAGCGTTTCATCATGATCTTGA
CTGAGCACTTAGTACGATGTGAAACTGATGGGACCAGTGTATTAACACCGTGGTATAAGA
ACTGTATAGAGCGGCTCCAGCAGATCTTCCTTCAGCATCACCAAATAATCCAGCAGTACA
TGGTGACCCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGATTTTTCTAAGAAAATGTATTATGATGTTAGAGAAAATATATTTAAAAAGTACAATT
CATGATGGTGGTATCAGACTCTGTCAGACATCTTAGGACACAGACCTAAGTGTGAAGGGC
ATACTGTGTTTTCTTCTTATAACTGTATTATTAGAACCACCATTTAGAGAGAGATGAACC
AAGAAATCTATGTGGAATTTGTAAAAAGAAATAGATTATATAGAAGAATTAAGCAAACAA
TTCCAAAAAACTAAGAACTAAGATTATGCTTAGTTTTACATTTTAAGTGTTTGAAATCGG
TGATGGTCTTTGTCGTTTATTAGCACTCATAGAATGTTGCACGAATGTCTGACTTAGCAT
TTGGATGAGTGTGCCATCTTTAGTGATTCAGGCAAGGGAACAGAGAATTGCTATACTAAC
ATTTTCCTAACTCTCTTACTATGGATGACGATGATGATGAAGGATTCAGCTTTAACCCAT
TAAAAATAGAGGTCTTTGTACAGACTCTGCTACACTTAGCAGCCAAGTCATTCAGCCACT
CCTTCAGCGCTCTTGCAAAGTTTCATGAAGTCTTCAAAACCCTAGCTGAAAGTGATGAAG
GAAAATTACATGTTCTAAGAGTCATGTTTGAGGTCTGGCGGAACCATCCACAGATGATTG
CTGTACTAGTAGATAAGATGATTCGTACGCAGATTGTTGACTGTGCTGCAGTAGCAAACT
GGATCTTCTCTTCAGAACTATCTCGTGACTTTACCAGATTGTTTGTTTGGGAAATCCTGC
ACTCCACAATTCGTAAGATGAACAAACATGTTCTGAAGATTCAGAAAGAGCTAGAAGAAG
CTAAAGAAAAACTCGCAAGGCAACACAAACGGCGAAGTGATGACGACGACAGAAGCAGTG
ACAGGAAAGATGGGGCTCTTGAGGAACAAATAGAAAGACTGCAGGAAAAAGTGGAATCTG
CTCAGAGTGAACAAAAGAATCTCTTCCTTGTCATATTTCAGCGTTTCATCATGATCTTGA
CTGAGCACTTAGTACGATGTGAAACTGATGGGACCAGTGTATTAACACCGTGGTATAAGA
ACTGTATAGAGCGGCTCCAGCAGATCTTCCTTCAGCATCACCAAATAATCCAGCAGTACA
TGGTGACCCTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61819255|ref|XP_615007.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61819255|ref|XP_615007.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               442-561, - strand, RNAz p=0.523724

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               442-561, - strand, RNAz p=0.523724

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               1-561, gnl|bosTau2|chr8 (32897531-32898092)
               

               
               1-561, gnl|Hg17|chr9 (97503451-97503983)
               


               
               748-908, gnl|bosTau2|chr8 (32901514-32901672)
               

               
               748-908, gnl|Hg17|chr9 (97508592-97508751)
               

               
               748-908, gnl|Mm7|chr4 (46182935-46183074)
               


               
               990-1115, gnl|bosTau2|chr12 (45422688-45422564)
               

               
               990-1115, gnl|Hg17|chr9 (97511424-97511543)
               

               
               990-1115, gnl|Mm7|chr4 (46184281-46184399)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-561, gnl|bosTau2|chr8 (32897531-32898092)
               

               
               1-561, gnl|Hg17|chr9 (97503451-97503983)
               


               
               748-908, gnl|bosTau2|chr8 (32901514-32901672)
               

               
               748-908, gnl|Hg17|chr9 (97508592-97508751)
               

               
               748-908, gnl|Mm7|chr4 (46182935-46183074)
               


               
               990-1115, gnl|bosTau2|chr12 (45422688-45422564)
               

               
               990-1115, gnl|Hg17|chr9 (97511424-97511543)
               

               
               990-1115, gnl|Mm7|chr4 (46184281-46184399)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	1-561, gnl\|bosTau2\|chr8 (32897531-32898092)
	1-561, gnl\|Hg17\|chr9 (97503451-97503983)

	748-908, gnl\|bosTau2\|chr8 (32901514-32901672)
	748-908, gnl\|Hg17\|chr9 (97508592-97508751)
	748-908, gnl\|Mm7\|chr4 (46182935-46183074)

	990-1115, gnl\|bosTau2\|chr12 (45422688-45422564)
	990-1115, gnl\|Hg17\|chr9 (97511424-97511543)
	990-1115, gnl\|Mm7\|chr4 (46184281-46184399)