Non-Coding RNA Search

Ss1.1-rlnt31c_c21.5

Sequence:


               
               TGGACACATTTTTCCAGATTTTGATTTATCATGGTGAGACCATAGCTCAATGGCGCAAGT
CAGGTTACCAGGACATGCCAGAATATGAAAATTTCCGCCACCTTCTGCAAGCCCCAGTGG
ATGATGCCCAGGAGATTCTTCACTCCAGATTTCCAATGCCGAGGTACATTGACACTGAAC
ATGGAGGCAGCCAGGCTCGTTTCCTGCTTTCAAAAGTCAATCCTTCACAGACTCATAATA
ATATGTATGCCTGGGGACAGGAGTCTGGAGCACCTATTCTCACAGATGATGTTAGTTTAC
AAGTGTTTATGGATCACTTGAAAAAGCTTGCTGTGTCAAGTGCTGCCTGATGTGCTAAAC
ATATTAAGGACACTTAAGAAGATGAAGTAATATTTCAGTTTCTTTTTTTTCCAGTTAATT
TGTGGAAGCCAACAGAGAGATCTCTCTAGACTCTTTTTGTATTAGTATGGTTTGAGACAA
CATATGAAAACATGTTCATGTTTATAGATTAAGCTAGGATGTAAGAGCAATAAGAACAAA
TTTGTTTTGCTTGCCACAGTATTATATAACTGGTTTTAGGAATTTGCGGTCTTTATAACT
TAATTATGTTAAAAAGTAAAAATAGAGTCTGCCTTGTACTACAGAAACATAACTCATTTG
TATATTGCAGACAAATCCAAAGTGGCACTGAATGTTCTTGACTTTTTTGAAAACTTCTTA
ATTTTAACCAGAAAGCAAAGAAAATAATCAAAAGTAATGATAAATGTGAACATTTTTGCC
TACTCATTGAATATTTTTCCATGATTTTCAGCACTGTGTGTACACTTTTTCTGTACTTAC
TCTGTTAAGGCAGATTTATTTTTATGATGATTTGTTTAGGAATTATTTGCCTTTAGATAT
GGTAATTTTCATGAAGATAATTTTAAAGTTTTTGGTCATTTGAAAAAATAACTTAGAGAT
TAAAATGTTTCAGAATAACAATTCCACAACTGATAACAAATGTGAAATTCCCACAAAGTG
GCCATCTGTGTGGTGAAATGTAATGATTTTTTTTAGAGGGAGATAAAAAGTAAACAGTTC
TGTCAGAATGCATTGTAGAAGGCCTTTGCAGTAAAATGACTGTTGTAACTTCTAAACCCA
ATTTGGTGTTCACTGCATGGTTTTATTGTTTCCCCCTTTTTTTTTGAGGTGAATTTTACA
TTATATCCTTCAGTATTTTGAACTGTTTTGGGAGTTTACACATTACTTTTTGTTTTTGCT
TCCATTTTTTGAACTTTGTTAAGTTGTAGTTCTTAATGAAACAGTATTATCTGATATTTT
GTTGAATTATATCATGTGGTGATGCTCAGTTCTATTCTGATTTATTCATTAGTATCATTC
ACTTTTACCTTTAATAAAAGTTTACTTGTAGTAAATGTTTACATTGCTAAAGCCAGATAT
GTTTGACAATGAAATTTACATCAAGTACTGCACATGGAAGGTGGTGCTATGAAGTGCGCT
TAGAAGGACGGTGTGATGACTGTACTTGCATGAACGCAATCATTTGATGGTGAAACAGAA
ACTTTAAAAATTGTTTATTATATTCGGTTAGAGTAAATAAATTGCTCTGTTCCATTTTAT
TTGAATTGAGCTGTGCTAGGCCTAAATACCAATAAAATATACTTATTCTCTGTTTTCCTG
CCTGTTTTGAAAACTAGTAAGCCTGAAAAGCCTAATGTAACATTAGAGCATTTATAAAAC
CTTCAATTGTGTATTAAGAAGTTACTCATTTTTAAAAAAATAACAGCTGAATGGAGACTT
AATTCACATACCACACAATTCACCTATGTAAAGTTCAGTGAATTTTAGAGTATTCATATC
ACCACAGTCAGTTTTAGAACATTTTCATCCTCCAAGTAGTTATTTGTTCTTGCTATAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACACATTTTTCCAGATTTTGATTTATCATGGTGAGACCATAGCTCAATGGCGCAAGT
CAGGTTACCAGGACATGCCAGAATATGAAAATTTCCGCCACCTTCTGCAAGCCCCAGTGG
ATGATGCCCAGGAGATTCTTCACTCCAGATTTCCAATGCCGAGGTACATTGACACTGAAC
ATGGAGGCAGCCAGGCTCGTTTCCTGCTTTCAAAAGTCAATCCTTCACAGACTCATAATA
ATATGTATGCCTGGGGACAGGAGTCTGGAGCACCTATTCTCACAGATGATGTTAGTTTAC
AAGTGTTTATGGATCACTTGAAAAAGCTTGCTGTGTCAAGTGCTGCCTGATGTGCTAAAC
ATATTAAGGACACTTAAGAAGATGAAGTAATATTTCAGTTTCTTTTTTTTCCAGTTAATT
TGTGGAAGCCAACAGAGAGATCTCTCTAGACTCTTTTTGTATTAGTATGGTTTGAGACAA
CATATGAAAACATGTTCATGTTTATAGATTAAGCTAGGATGTAAGAGCAATAAGAACAAA
TTTGTTTTGCTTGCCACAGTATTATATAACTGGTTTTAGGAATTTGCGGTCTTTATAACT
TAATTATGTTAAAAAGTAAAAATAGAGTCTGCCTTGTACTACAGAAACATAACTCATTTG
TATATTGCAGACAAATCCAAAGTGGCACTGAATGTTCTTGACTTTTTTGAAAACTTCTTA
ATTTTAACCAGAAAGCAAAGAAAATAATCAAAAGTAATGATAAATGTGAACATTTTTGCC
TACTCATTGAATATTTTTCCATGATTTTCAGCACTGTGTGTACACTTTTTCTGTACTTAC
TCTGTTAAGGCAGATTTATTTTTATGATGATTTGTTTAGGAATTATTTGCCTTTAGATAT
GGTAATTTTCATGAAGATAATTTTAAAGTTTTTGGTCATTTGAAAAAATAACTTAGAGAT
TAAAATGTTTCAGAATAACAATTCCACAACTGATAACAAATGTGAAATTCCCACAAAGTG
GCCATCTGTGTGGTGAAATGTAATGATTTTTTTTAGAGGGAGATAAAAAGTAAACAGTTC
TGTCAGAATGCATTGTAGAAGGCCTTTGCAGTAAAATGACTGTTGTAACTTCTAAACCCA
ATTTGGTGTTCACTGCATGGTTTTATTGTTTCCCCCTTTTTTTTTGAGGTGAATTTTACA
TTATATCCTTCAGTATTTTGAACTGTTTTGGGAGTTTACACATTACTTTTTGTTTTTGCT
TCCATTTTTTGAACTTTGTTAAGTTGTAGTTCTTAATGAAACAGTATTATCTGATATTTT
GTTGAATTATATCATGTGGTGATGCTCAGTTCTATTCTGATTTATTCATTAGTATCATTC
ACTTTTACCTTTAATAAAAGTTTACTTGTAGTAAATGTTTACATTGCTAAAGCCAGATAT
GTTTGACAATGAAATTTACATCAAGTACTGCACATGGAAGGTGGTGCTATGAAGTGCGCT
TAGAAGGACGGTGTGATGACTGTACTTGCATGAACGCAATCATTTGATGGTGAAACAGAA
ACTTTAAAAATTGTTTATTATATTCGGTTAGAGTAAATAAATTGCTCTGTTCCATTTTAT
TTGAATTGAGCTGTGCTAGGCCTAAATACCAATAAAATATACTTATTCTCTGTTTTCCTG
CCTGTTTTGAAAACTAGTAAGCCTGAAAAGCCTAATGTAACATTAGAGCATTTATAAAAC
CTTCAATTGTGTATTAAGAAGTTACTCATTTTTAAAAAAATAACAGCTGAATGGAGACTT
AATTCACATACCACACAATTCACCTATGTAAAGTTCAGTGAATTTTAGAGTATTCATATC
ACCACAGTCAGTTTTAGAACATTTTCATCCTCCAAGTAGTTATTTGTTCTTGCTATAAGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               37-195, gnl|bosTau2|chr21 (32354897-32355055)
               

               
               37-195, gnl|Hg17|chr14 (38579844-38579686)
               

               
               37-195, gnl|Mm7|chr12 (56904044-56903886)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-195, gnl|bosTau2|chr21 (32354897-32355055)
               

               
               37-195, gnl|Hg17|chr14 (38579844-38579686)
               

               
               37-195, gnl|Mm7|chr12 (56904044-56903886)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               bfe (1.049)
               

               
               cbe (0.717703)
               

               
               aor (0.390549)
               

               
               cty (0.31224)
               

               
               lun (0.300978)
               

               
               lin (0.291206)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (1.049)
               

               
               cbe (0.717703)
               

               
               aor (0.390549)
               

               
               cty (0.31224)
               

               
               lun (0.300978)
               

               
               lin (0.291206)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	37-195, gnl\|bosTau2\|chr21 (32354897-32355055)
	37-195, gnl\|Hg17\|chr14 (38579844-38579686)
	37-195, gnl\|Mm7\|chr12 (56904044-56903886)

	bfe (1.049)
	cbe (0.717703)
	aor (0.390549)
	cty (0.31224)
	lun (0.300978)
	lin (0.291206)
	pla (0.267344)
	pgl (0.236967)
	mgp (0.230681)
	tes (0.207814)
	fli (0.202881)
	ill (0.175593)
	duo (0.172801)
	eye (0.170503)
	cut (0.169924)
	fco (0.157208)
	fat (0.147427)
	lnt (0.142308)
	ste (0.135208)
	ret (0.128733)
	thg (0.126791)
	ese (0.126502)
	spc (0.113366)
	ldo (0.0970026)