Non-Coding RNA Search

Ss1.1-rlnt31c_e17.5

Sequence:


               
               TAATGCTATAACTTTATCTCCCTGGCAGGCAGGTTTGTTTTGTGGAAGTTACAGCCAGAA
GTCCTTTTCTCTGAGGCCTGGTGATGAGTTCAGGAGCACCCAGCCCTGTAAGGGGCCAGT
GGACTGATCCTGAACCCCTGGAACTTTTATCTGCTTCAGCAGTTTGGGAGAGTAGCCTGT
TAGGATGGTAGCCGTAAATGTTGCCTGTGATTTTATCAGGGAGCTGTTGCATGCTCTGAC
CATTTGAGCAGAGGTGGCACGGCATTCGTGGCCTTTGCACGCAGTTCTGTGGTAGCCTGT
AAACACGATAGAGGATGCAGCCTTAGTTTCTGGAAGATGATCGTCATTCCAGGGTGCCAC
TAGGAACTTTTTCCATTCCAAGTCTTTGGACTTCATAGCAATGGAATTGTTTTTTCATAA
TTCCCAACCTTCCCTAAATATTTGTCAAGGACAAAGACCAGGAATGTGGATCTTTATTCT
CCTCATATAAACAACTTTGTACACAGGACTTCATGCTTTCATATATGAAGGAGAAGAAAC
TAGCTCCCTCGTATGGCAGCTCCAGAATCAGAAGATTGTGCACGTTTAAGGGGTTGAATA
TATTTTGTAAAACTCTAATGCGTTTGTATTTCTGTGCTGTTCTAAAGATTACCTTTTTAC
TTATATTAATTAAAGATATAGAAAGTATATATTTAAATCATGGAAATGGGACACAACCTA
GGGGTTTCTTTCTTCAAACTTATTCTTCATCAGCGTCTCCCACTCACATAGTATGCTGCT
CAAATTCTTTTGTGTGTGCAATATGAACATATGAACATTTCAGTCAAGTACTGAGCCAGA
AAAGGTAATTGAAGTTTTTAGAAAACTTAAGTGCTTAGGAAGTATTTTGTTCTCTTGAAA
TATGAATAATTTATAGCTGGAAAAATAGGATCAAGACTTAAGTGTTTCTGACCACTTGGT
CACTGGTTCCTAAGTTTAGGAAGCATTTGATTAACAAGTTGGTGAAGGCATTTAGTAGTT
ACAGAAATAGTTTAAATACTTGAGGTTAAAACTTTCCACAAACGCTATCTAAGAAAATTG
AGCTTAGAAATCTTAGAAAGTTTTCTAAGGATGCTTAGCTGTGGTACATGTTTTGATCAG
AAAGATAGTTTCTCTTTGCTCTAGTAGTTTTATAATTTGTACGAGGTCTTCATTTCTGTT
GTCATTTGTTTTTTAAAAAATGTTAAAATTATAAATCACGTCTAATCATACTGAATTGTA
AAACTTGTACTGTATCTTTATTTTTAGGGAAAATAAAATAAAATTATCCTGTTTGTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATGCTATAACTTTATCTCCCTGGCAGGCAGGTTTGTTTTGTGGAAGTTACAGCCAGAA
GTCCTTTTCTCTGAGGCCTGGTGATGAGTTCAGGAGCACCCAGCCCTGTAAGGGGCCAGT
GGACTGATCCTGAACCCCTGGAACTTTTATCTGCTTCAGCAGTTTGGGAGAGTAGCCTGT
TAGGATGGTAGCCGTAAATGTTGCCTGTGATTTTATCAGGGAGCTGTTGCATGCTCTGAC
CATTTGAGCAGAGGTGGCACGGCATTCGTGGCCTTTGCACGCAGTTCTGTGGTAGCCTGT
AAACACGATAGAGGATGCAGCCTTAGTTTCTGGAAGATGATCGTCATTCCAGGGTGCCAC
TAGGAACTTTTTCCATTCCAAGTCTTTGGACTTCATAGCAATGGAATTGTTTTTTCATAA
TTCCCAACCTTCCCTAAATATTTGTCAAGGACAAAGACCAGGAATGTGGATCTTTATTCT
CCTCATATAAACAACTTTGTACACAGGACTTCATGCTTTCATATATGAAGGAGAAGAAAC
TAGCTCCCTCGTATGGCAGCTCCAGAATCAGAAGATTGTGCACGTTTAAGGGGTTGAATA
TATTTTGTAAAACTCTAATGCGTTTGTATTTCTGTGCTGTTCTAAAGATTACCTTTTTAC
TTATATTAATTAAAGATATAGAAAGTATATATTTAAATCATGGAAATGGGACACAACCTA
GGGGTTTCTTTCTTCAAACTTATTCTTCATCAGCGTCTCCCACTCACATAGTATGCTGCT
CAAATTCTTTTGTGTGTGCAATATGAACATATGAACATTTCAGTCAAGTACTGAGCCAGA
AAAGGTAATTGAAGTTTTTAGAAAACTTAAGTGCTTAGGAAGTATTTTGTTCTCTTGAAA
TATGAATAATTTATAGCTGGAAAAATAGGATCAAGACTTAAGTGTTTCTGACCACTTGGT
CACTGGTTCCTAAGTTTAGGAAGCATTTGATTAACAAGTTGGTGAAGGCATTTAGTAGTT
ACAGAAATAGTTTAAATACTTGAGGTTAAAACTTTCCACAAACGCTATCTAAGAAAATTG
AGCTTAGAAATCTTAGAAAGTTTTCTAAGGATGCTTAGCTGTGGTACATGTTTTGATCAG
AAAGATAGTTTCTCTTTGCTCTAGTAGTTTTATAATTTGTACGAGGTCTTCATTTCTGTT
GTCATTTGTTTTTTAAAAAATGTTAAAATTATAAATCACGTCTAATCATACTGAATTGTA
AAACTTGTACTGTATCTTTATTTTTAGGGAAAATAAAATAAAATTATCCTGTTTGTCCTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               36-131, - strand, RNAz p=0.829361
               

               
               66-172, - strand, RNAz p=0.537632

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-131, - strand, RNAz p=0.829361
               

               
               66-172, - strand, RNAz p=0.537632

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               10-226, gnl|bosTau2|chr4 (34364166-34364389)
               

               
               10-226, gnl|canFam2|chr14 (47878129-47879387)
               

               
               10-226, gnl|dasNov1|scaffold_41821 (7502-8721)
               

               
               10-226, gnl|echTel1|scaffold_276427 (43622-44809)
               

               
               10-226, gnl|hg17|chr7 (32399679-32400935)
               

               
               10-226, gnl|Hg17|chr7 (32400197-32400448)
               

               
               10-226, gnl|mm7|chr6 (56723543-56724756)
               

               
               10-226, gnl|Mm7|chr6 (56724023-56724280)
               

               
               10-226, gnl|oryCun1|scaffold_214983 (52835-51730)
               

               
               10-226, gnl|panTro1|chr6 (33510355-33511612)
               

               
               10-226, gnl|rheMac2|chr3 (93645452-93644197)
               

               
               10-226, gnl|rn3|chr4 (85953613-85954836)
               


               
               1125-1320, gnl|bosTau2|chr11 (29291481-29291676)
               

               
               1125-1320, gnl|Mm7|chr6 (56725106-56725280)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-226, gnl|bosTau2|chr4 (34364166-34364389)
               

               
               10-226, gnl|canFam2|chr14 (47878129-47879387)
               

               
               10-226, gnl|dasNov1|scaffold_41821 (7502-8721)
               

               
               10-226, gnl|echTel1|scaffold_276427 (43622-44809)
               

               
               10-226, gnl|hg17|chr7 (32399679-32400935)
               

               
               10-226, gnl|Hg17|chr7 (32400197-32400448)
               

               
               10-226, gnl|mm7|chr6 (56723543-56724756)
               

               
               10-226, gnl|Mm7|chr6 (56724023-56724280)
               

               
               10-226, gnl|oryCun1|scaffold_214983 (52835-51730)
               

               
               10-226, gnl|panTro1|chr6 (33510355-33511612)
               

               
               10-226, gnl|rheMac2|chr3 (93645452-93644197)
               

               
               10-226, gnl|rn3|chr4 (85953613-85954836)
               


               
               1125-1320, gnl|bosTau2|chr11 (29291481-29291676)
               

               
               1125-1320, gnl|Mm7|chr6 (56725106-56725280)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               cbr (0.383926)
               

               
               duo (0.345602)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.383926)
               

               
               duo (0.345602)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	36-131, - strand, RNAz p=0.829361
	66-172, - strand, RNAz p=0.537632

	10-226, gnl\|bosTau2\|chr4 (34364166-34364389)
	10-226, gnl\|canFam2\|chr14 (47878129-47879387)
	10-226, gnl\|dasNov1\|scaffold_41821 (7502-8721)
	10-226, gnl\|echTel1\|scaffold_276427 (43622-44809)
	10-226, gnl\|hg17\|chr7 (32399679-32400935)
	10-226, gnl\|Hg17\|chr7 (32400197-32400448)
	10-226, gnl\|mm7\|chr6 (56723543-56724756)
	10-226, gnl\|Mm7\|chr6 (56724023-56724280)
	10-226, gnl\|oryCun1\|scaffold_214983 (52835-51730)
	10-226, gnl\|panTro1\|chr6 (33510355-33511612)
	10-226, gnl\|rheMac2\|chr3 (93645452-93644197)
	10-226, gnl\|rn3\|chr4 (85953613-85954836)

	1125-1320, gnl\|bosTau2\|chr11 (29291481-29291676)
	1125-1320, gnl\|Mm7\|chr6 (56725106-56725280)

	cbr (0.383926)
	duo (0.345602)
	mga (0.32041)
	fco (0.314416)
	ret (0.257467)
	eli (0.151814)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	lnt (0.142308)
	tra (0.123092)
	cty (0.10408)