Ss1.1-rlnt31c_e5.5
|
CAATCCATCTTCCCACTGCAACCCCAACCACCTCAGCTACTTCAAGTTTGTTGGACGCAT
TGTGGCCAAAGCTGTATATGACAACCGCCTTCTGGAGTGCTACTTCACTCGGTCCTTCTA
CAAACACATCTTGGGCAAGTCTGTCAGATATACAGATATGGAGAGCGAAGATTACCACTT
CTACCAGGGCCTGGTTTATCTGCTGGAAAATGATGTCTCCACACTAGGCTATGACCTCAC
CTTCAGCACTGAGGTCCAAGAGTTTGGAGTCTGTGAAGTTCGTGACCTCAAACCCAATGG
GGCCAACATCTTGGTAACAGAGGAGAATAAGAAGGAGTATGTACACCTGGTGTGCCAGAT
GAGAATGACAGGAGCCATCCGCAAACAGCTGGCAGCTTTCTTAGAAGGCTTCTATGAGAT
CATTCCAAAGCGCCTCATTTCCATCTTCACTGAGCAGGAGTTAGAACTGCTTATATCAGG
ACTGCCTACAATTGACATTGACGATTTGAAATCCAACACTGAATACCACAAGTACCAGTC
CAACTCTATTCAGATCCAGTGGTTTTGGAGAGCATTGCGTTCTTTTGATCAAGCTGACCG
TGCCAAGTTCCTCCAATTTGTCACGGGCACTTCCAAGGTGCCCCTGCAGGGTTTTGCTGC
CCTTGAAGGCATGAATGGCATTCAGAAGTTTCAGATCCATCGAGATGACAGGTCCACAGA
CCGCCTGCCTTCAGCTCACACATGTTTTAATCAGCTGGACCTGCCTGCCTATGAGAGCTT
TGAGAAGCTCCGCCACATGCTACTATTGGCCATCCAGGAGTGCTCTGAAGGCTTTGGGCT
GGCCTAATAAGGCCCTGCCCACTACTATGGGGTTTTTCTACCATTGTTGGACCTGGAAAG
GGGGGAAGTGGAAACAAAAAAAAGAACCAGAAAGAAAATGTCAAAAACCAATAAATGAAA
TCCACCAACTCACCATGTGTGTGTCCCAGCTACCCAGTTTTCCCCAGAGCATACCCGTTC
CCCCTTTCCTGTTCATTTCTCTCTCCTTCTCCCTTTTCTTCACTTCCTCTCCCCGTTCCA
TGCCGTCCATGATCCCCCCACCCCATGTGTTAAAAAGGCAGTAGCCTTTGCAGGGACCTG
TTTGTCCCAACTGTTTGAACAGTGTGCTCCTCAGATTCTGTGTTCAGAAGGATTTGCTGC
ATTGAGACTTGAAACCTTTGGATAGGGGAAAAATTATATATATATATATTTTTTTGTTCT
GTTTGCATTTCTTAATTTGTGCTTGGAATGTGTTGATGTGCACAGCTAATGATTCAATGC
GAGACAAGATTGGCGTCTGTGTTGTGGAGGTTTCAAATAAAGCGCACTCTTCATAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAATCCATCTTCCCACTGCAACCCCAACCACCTCAGCTACTTCAAGTTTGTTGGACGCAT
TGTGGCCAAAGCTGTATATGACAACCGCCTTCTGGAGTGCTACTTCACTCGGTCCTTCTA
CAAACACATCTTGGGCAAGTCTGTCAGATATACAGATATGGAGAGCGAAGATTACCACTT
CTACCAGGGCCTGGTTTATCTGCTGGAAAATGATGTCTCCACACTAGGCTATGACCTCAC
CTTCAGCACTGAGGTCCAAGAGTTTGGAGTCTGTGAAGTTCGTGACCTCAAACCCAATGG
GGCCAACATCTTGGTAACAGAGGAGAATAAGAAGGAGTATGTACACCTGGTGTGCCAGAT
GAGAATGACAGGAGCCATCCGCAAACAGCTGGCAGCTTTCTTAGAAGGCTTCTATGAGAT
CATTCCAAAGCGCCTCATTTCCATCTTCACTGAGCAGGAGTTAGAACTGCTTATATCAGG
ACTGCCTACAATTGACATTGACGATTTGAAATCCAACACTGAATACCACAAGTACCAGTC
CAACTCTATTCAGATCCAGTGGTTTTGGAGAGCATTGCGTTCTTTTGATCAAGCTGACCG
TGCCAAGTTCCTCCAATTTGTCACGGGCACTTCCAAGGTGCCCCTGCAGGGTTTTGCTGC
CCTTGAAGGCATGAATGGCATTCAGAAGTTTCAGATCCATCGAGATGACAGGTCCACAGA
CCGCCTGCCTTCAGCTCACACATGTTTTAATCAGCTGGACCTGCCTGCCTATGAGAGCTT
TGAGAAGCTCCGCCACATGCTACTATTGGCCATCCAGGAGTGCTCTGAAGGCTTTGGGCT
GGCCTAATAAGGCCCTGCCCACTACTATGGGGTTTTTCTACCATTGTTGGACCTGGAAAG
GGGGGAAGTGGAAACAAAAAAAAGAACCAGAAAGAAAATGTCAAAAACCAATAAATGAAA
TCCACCAACTCACCATGTGTGTGTCCCAGCTACCCAGTTTTCCCCAGAGCATACCCGTTC
CCCCTTTCCTGTTCATTTCTCTCTCCTTCTCCCTTTTCTTCACTTCCTCTCCCCGTTCCA
TGCCGTCCATGATCCCCCCACCCCATGTGTTAAAAAGGCAGTAGCCTTTGCAGGGACCTG
TTTGTCCCAACTGTTTGAACAGTGTGCTCCTCAGATTCTGTGTTCAGAAGGATTTGCTGC
ATTGAGACTTGAAACCTTTGGATAGGGGAAAAATTATATATATATATATTTTTTTGTTCT
GTTTGCATTTCTTAATTTGTGCTTGGAATGTGTTGATGTGCACAGCTAATGATTCAATGC
GAGACAAGATTGGCGTCTGTGTTGTGGAGGTTTCAAATAAAGCGCACTCTTCATAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-150, gnl|bosTau2|chrX (26906935-26906786) |
|
1-150, gnl|Hg17|chrX (53446508-53446359) |
|
1-150, gnl|Mm7|chrX (146688879-146689028) |
| |
|
369-553, gnl|bosTau2|chrX (26905543-26905359) |
|
369-553, gnl|canFam2|chrX (45206642-45206876) |
|
369-553, gnl|danRer3|chr23 (39416188-39416001) |
|
369-553, gnl|dasNov1|scaffold_19843 (47141-46906) |
|
369-553, gnl|fr1|chrUn (19855435-19855209) |
|
369-553, gnl|hg17|chrX (53444479-53444712) |
|
369-553, gnl|Hg17|chrX (53444682-53444498) |
|
369-553, gnl|loxAfr1|scaffold_14194 (18983-19216) |
|
369-553, gnl|mm7|chrX (146691412-146691191) |
|
369-553, gnl|Mm7|chrX (146691221-146691405) |
|
369-553, gnl|monDom2|scaffold_255 (19796-19994) |
|
369-553, gnl|panTro1|chrX (54693359-54693592) |
|
369-553, gnl|rheMac2|chrX (51849722-51849955) |
|
369-553, gnl|rn3|chrX (41448729-41448507) |
|
369-553, gnl|tetNig1|chr9 (3598461-3598238) |
|
369-553, gnl|xenTro1|scaffold_750 (521881-522100) |
| |
|
744-1376, gnl|bosTau2|chrX (26904298-26903673) |
|
744-1376, gnl|Hg17|chrX (53443394-53442776) |
|
744-1376, gnl|Mm7|chrX (146692955-146693563) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-150, gnl|bosTau2|chrX (26906935-26906786) |
|
1-150, gnl|Hg17|chrX (53446508-53446359) |
|
1-150, gnl|Mm7|chrX (146688879-146689028) |
| |
|
369-553, gnl|bosTau2|chrX (26905543-26905359) |
|
369-553, gnl|canFam2|chrX (45206642-45206876) |
|
369-553, gnl|danRer3|chr23 (39416188-39416001) |
|
369-553, gnl|dasNov1|scaffold_19843 (47141-46906) |
|
369-553, gnl|fr1|chrUn (19855435-19855209) |
|
369-553, gnl|hg17|chrX (53444479-53444712) |
|
369-553, gnl|Hg17|chrX (53444682-53444498) |
|
369-553, gnl|loxAfr1|scaffold_14194 (18983-19216) |
|
369-553, gnl|mm7|chrX (146691412-146691191) |
|
369-553, gnl|Mm7|chrX (146691221-146691405) |
|
369-553, gnl|monDom2|scaffold_255 (19796-19994) |
|
369-553, gnl|panTro1|chrX (54693359-54693592) |
|
369-553, gnl|rheMac2|chrX (51849722-51849955) |
|
369-553, gnl|rn3|chrX (41448729-41448507) |
|
369-553, gnl|tetNig1|chr9 (3598461-3598238) |
|
369-553, gnl|xenTro1|scaffold_750 (521881-522100) |
| |
|
744-1376, gnl|bosTau2|chrX (26904298-26903673) |
|
744-1376, gnl|Hg17|chrX (53443394-53442776) |
|
744-1376, gnl|Mm7|chrX (146692955-146693563) |
|
cbr (2.55951) |
|
lnt (0.426925) |
|
csp (0.322373) |
|
cty (0.31224) |
|
cbe (0.239234) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
duo (0.172801) |
|
cag (0.151194) |
|
isp (0.150376) |
|
fat (0.147427) |
|
hyp (0.142837) |
|
che (0.136314) |
|
ute (0.132784) |
|
ova (0.129132) |
|
eep (0.122564) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
med (0.116252) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
cbr (2.55951) |
|
lnt (0.426925) |
|
csp (0.322373) |
|
cty (0.31224) |
|
cbe (0.239234) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
duo (0.172801) |
|
cag (0.151194) |
|
isp (0.150376) |
|
fat (0.147427) |
|
hyp (0.142837) |
|
che (0.136314) |
|
ute (0.132784) |
|
ova (0.129132) |
|
eep (0.122564) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
med (0.116252) |
|
jej (0.0989218) |
|
eje (0.0988338) |