Non-Coding RNA Search

Ss1.1-rlnt31c_g18.5.5

Sequence:


               
               CCTGCCGCCGCCGAGTCGCGCGGAGGCGGAGGCTCGGGTGTGCTCAAGATTCGGTTCTAC
CCGTAACCCACCGCCATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAAT
ACTGCTCTACAAGAGGTGCTGAAGACCGCCCTCATCCATGATGGCCTAGCACGTGGAATT
CGCGAAGCTGCCAAAGCCTTAGACAAGCGCCAAGCCCATCTTTGTGTGCTTGCATCCAAC
TGTGATGAGCCAATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAGCACCAGATCAAC
CTAATTAAGGTCGACGACAACAAGAAACTAGGGGAATGGGTAGGCCTCTGTAAAATTGAC
AGAGAGGGAAAACCCCGTAAAGTGGTTGGTTGCAGTTGTGTGGTGGTGAAGGACTATGGC
AAAGAGTCTCAGGCCAAGGATGTCATCGAGGAGTACTTCAAATGCAAGAAATAATCAAAT
AAAAAGACTGGCTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCCGCCGCCGAGTCGCGCGGAGGCGGAGGCTCGGGTGTGCTCAAGATTCGGTTCTAC
CCGTAACCCACCGCCATGGCCGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAAT
ACTGCTCTACAAGAGGTGCTGAAGACCGCCCTCATCCATGATGGCCTAGCACGTGGAATT
CGCGAAGCTGCCAAAGCCTTAGACAAGCGCCAAGCCCATCTTTGTGTGCTTGCATCCAAC
TGTGATGAGCCAATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAGCACCAGATCAAC
CTAATTAAGGTCGACGACAACAAGAAACTAGGGGAATGGGTAGGCCTCTGTAAAATTGAC
AGAGAGGGAAAACCCCGTAAAGTGGTTGGTTGCAGTTGTGTGGTGGTGAAGGACTATGGC
AAAGAGTCTCAGGCCAAGGATGTCATCGAGGAGTACTTCAAATGCAAGAAATAATCAAAT
AAAAAGACTGGCTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|28189346|dbj|BAC56364.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28189346|dbj|BAC56364.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               24-318, gnl|bosTau2|chr18 (34575906-34575611)
               

               
               24-318, gnl|Hg17|chr6 (109284684-109284394)
               

               
               24-318, gnl|Mm7|chrX (120010226-120009935)
               


               
               58-282, gnl|bosTau2|chr11 (25805964-25805742)
               

               
               58-282, gnl|Hg17|chr13 (20566870-20566647)
               

               
               58-282, gnl|Mm7|chr7 (27204749-27204970)
               


               
               330-531, gnl|bosTau2|chr11 (25801764-25801563)
               

               
               330-531, gnl|Hg17|chr13 (20566598-20566409)
               

               
               330-531, gnl|Mm7|chr7 (27205021-27205183)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-318, gnl|bosTau2|chr18 (34575906-34575611)
               

               
               24-318, gnl|Hg17|chr6 (109284684-109284394)
               

               
               24-318, gnl|Mm7|chrX (120010226-120009935)
               


               
               58-282, gnl|bosTau2|chr11 (25805964-25805742)
               

               
               58-282, gnl|Hg17|chr13 (20566870-20566647)
               

               
               58-282, gnl|Mm7|chr7 (27204749-27204970)
               


               
               330-531, gnl|bosTau2|chr11 (25801764-25801563)
               

               
               330-531, gnl|Hg17|chr13 (20566598-20566409)
               

               
               330-531, gnl|Mm7|chr7 (27205021-27205183)

Expressed library(ies): 89 entry(ies)

More info

Expressed library(ies): 89 entry(ies)

Help | Less info


               
               cut (19.5412)
               

               
               sto (18.5218)
               

               
               cst (15.264)
               

               
               cmu (14.9115)
               

               
               cje (14.0449)
               

               
               cki (12.0621)
               

               
               che (10.0872)
               

               
               csk (9.14849)
               

               
               sag (7.49132)
               

               
               eje (6.81953)
               

               
               ova (6.06921)
               

               
               mcp (5.80205)
               

               
               mgp (5.76701)
               

               
               ese (5.31309)
               

               
               aor (4.88186)
               

               
               mga (4.80615)
               

               
               med (4.76633)
               

               
               nlu (4.60035)
               

               
               sme (4.27611)
               

               
               nca (4.24309)
               

               
               rec (4.15369)
               

               
               cte (4.09836)
               

               
               cbe (4.06699)
               

               
               pty (3.996)
               

               
               duo (3.97443)
               

               
               fli (3.65186)
               

               
               elu (3.46821)
               

               
               thg (3.42335)
               

               
               spc (3.40097)
               

               
               hlv (3.34215)
               

               
               nep (3.31065)
               

               
               ssp (3.25247)
               

               
               nje (2.98656)
               

               
               nmm (2.78884)
               

               
               jca (2.73504)
               

               
               vin (2.66046)
               

               
               nco (2.58774)
               

               
               nms (2.5663)
               

               
               eep (2.45128)
               

               
               ecc (2.41574)
               

               
               ece (2.29305)
               

               
               ton (2.2815)
               

               
               lnt (2.27693)
               

               
               jej (2.2752)
               

               
               amn (2.08855)
               

               
               cag (1.96553)
               

               
               eli (1.82177)
               

               
               bfe (1.79829)
               

               
               nbm (1.78784)
               

               
               ebs (1.77452)
               

               
               mas (1.68244)
               

               
               isp (1.65414)
               

               
               fty (1.58256)
               

               
               mgm (1.44274)
               

               
               eru (1.44058)
               

               
               eye (1.36402)
               

               
               fce (1.35796)
               

               
               cly (1.32706)
               

               
               cov (1.32153)
               

               
               gul (1.24312)
               

               
               ill (1.22915)
               

               
               col (1.17005)
               

               
               csp (1.1283)
               

               
               fat (1.03199)
               

               
               hea (1.02249)
               

               
               hyp (0.999857)
               

               
               pgl (0.947867)
               

               
               cga (0.837287)
               

               
               lyg (0.798616)
               

               
               fcc (0.791139)
               

               
               fco (0.78604)
               

               
               kid (0.778412)
               

               
               cli (0.764059)
               

               
               fbs (0.701385)
               

               
               sin (0.69979)
               

               
               fhi (0.678311)
               

               
               ute (0.663922)
               

               
               bla (0.621736)
               

               
               liv (0.585137)
               

               
               tes (0.415628)
               

               
               clu (0.358938)
               

               
               ldo (0.291008)
               

               
               spl (0.286369)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               tra (0.123092)

Expressed library(ies): 89 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (19.5412)
               

               
               sto (18.5218)
               

               
               cst (15.264)
               

               
               cmu (14.9115)
               

               
               cje (14.0449)
               

               
               cki (12.0621)
               

               
               che (10.0872)
               

               
               csk (9.14849)
               

               
               sag (7.49132)
               

               
               eje (6.81953)
               

               
               ova (6.06921)
               

               
               mcp (5.80205)
               

               
               mgp (5.76701)
               

               
               ese (5.31309)
               

               
               aor (4.88186)
               

               
               mga (4.80615)
               

               
               med (4.76633)
               

               
               nlu (4.60035)
               

               
               sme (4.27611)
               

               
               nca (4.24309)
               

               
               rec (4.15369)
               

               
               cte (4.09836)
               

               
               cbe (4.06699)
               

               
               pty (3.996)
               

               
               duo (3.97443)
               

               
               fli (3.65186)
               

               
               elu (3.46821)
               

               
               thg (3.42335)
               

               
               spc (3.40097)
               

               
               hlv (3.34215)
               

               
               nep (3.31065)
               

               
               ssp (3.25247)
               

               
               nje (2.98656)
               

               
               nmm (2.78884)
               

               
               jca (2.73504)
               

               
               vin (2.66046)
               

               
               nco (2.58774)
               

               
               nms (2.5663)
               

               
               eep (2.45128)
               

               
               ecc (2.41574)
               

               
               ece (2.29305)
               

               
               ton (2.2815)
               

               
               lnt (2.27693)
               

               
               jej (2.2752)
               

               
               amn (2.08855)
               

               
               cag (1.96553)
               

               
               eli (1.82177)
               

               
               bfe (1.79829)
               

               
               nbm (1.78784)
               

               
               ebs (1.77452)
               

               
               mas (1.68244)
               

               
               isp (1.65414)
               

               
               fty (1.58256)
               

               
               mgm (1.44274)
               

               
               eru (1.44058)
               

               
               eye (1.36402)
               

               
               fce (1.35796)
               

               
               cly (1.32706)
               

               
               cov (1.32153)
               

               
               gul (1.24312)
               

               
               ill (1.22915)
               

               
               col (1.17005)
               

               
               csp (1.1283)
               

               
               fat (1.03199)
               

               
               hea (1.02249)
               

               
               hyp (0.999857)
               

               
               pgl (0.947867)
               

               
               cga (0.837287)
               

               
               lyg (0.798616)
               

               
               fcc (0.791139)
               

               
               fco (0.78604)
               

               
               kid (0.778412)
               

               
               cli (0.764059)
               

               
               fbs (0.701385)
               

               
               sin (0.69979)
               

               
               fhi (0.678311)
               

               
               ute (0.663922)
               

               
               bla (0.621736)
               

               
               liv (0.585137)
               

               
               tes (0.415628)
               

               
               clu (0.358938)
               

               
               ldo (0.291008)
               

               
               spl (0.286369)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               tra (0.123092)

	24-318, gnl\|bosTau2\|chr18 (34575906-34575611)
	24-318, gnl\|Hg17\|chr6 (109284684-109284394)
	24-318, gnl\|Mm7\|chrX (120010226-120009935)

	58-282, gnl\|bosTau2\|chr11 (25805964-25805742)
	58-282, gnl\|Hg17\|chr13 (20566870-20566647)
	58-282, gnl\|Mm7\|chr7 (27204749-27204970)

	330-531, gnl\|bosTau2\|chr11 (25801764-25801563)
	330-531, gnl\|Hg17\|chr13 (20566598-20566409)
	330-531, gnl\|Mm7\|chr7 (27205021-27205183)

	cut (19.5412)
	sto (18.5218)
	cst (15.264)
	cmu (14.9115)
	cje (14.0449)
	cki (12.0621)
	che (10.0872)
	csk (9.14849)
	sag (7.49132)
	eje (6.81953)
	ova (6.06921)
	mcp (5.80205)
	mgp (5.76701)
	ese (5.31309)
	aor (4.88186)
	mga (4.80615)
	med (4.76633)
	nlu (4.60035)
	sme (4.27611)
	nca (4.24309)
	rec (4.15369)
	cte (4.09836)
	cbe (4.06699)
	pty (3.996)
	duo (3.97443)
	fli (3.65186)
	elu (3.46821)
	thg (3.42335)
	spc (3.40097)
	hlv (3.34215)
	nep (3.31065)
	ssp (3.25247)
	nje (2.98656)
	nmm (2.78884)
	jca (2.73504)
	vin (2.66046)
	nco (2.58774)
	nms (2.5663)
	eep (2.45128)
	ecc (2.41574)
	ece (2.29305)
	ton (2.2815)
	lnt (2.27693)
	jej (2.2752)
	amn (2.08855)
	cag (1.96553)
	eli (1.82177)
	bfe (1.79829)
	nbm (1.78784)
	ebs (1.77452)
	mas (1.68244)
	isp (1.65414)
	fty (1.58256)
	mgm (1.44274)
	eru (1.44058)
	eye (1.36402)
	fce (1.35796)
	cly (1.32706)
	cov (1.32153)
	gul (1.24312)
	ill (1.22915)
	col (1.17005)
	csp (1.1283)
	fat (1.03199)
	hea (1.02249)
	hyp (0.999857)
	pgl (0.947867)
	cga (0.837287)
	lyg (0.798616)
	fcc (0.791139)
	fco (0.78604)
	kid (0.778412)
	cli (0.764059)
	fbs (0.701385)
	sin (0.69979)
	fhi (0.678311)
	ute (0.663922)
	bla (0.621736)
	liv (0.585137)
	tes (0.415628)
	clu (0.358938)
	ldo (0.291008)
	spl (0.286369)
	ret (0.257467)
	sug (0.254582)
	lin (0.145603)
	ste (0.135208)
	pla (0.133672)
	tra (0.123092)