Non-Coding RNA Search

Ss1.1-rlnt31c_i10.5

Sequence:


               
               CAAAGACTCAGTACTGAAAGATTTGAAGGGCCCTGATGTATCGGTCACGTTGCAACCTGT
AAGAAAAGCTTTGCAGGTCACCCACATCTTAGCTCTCCAAAGATTCCATGTATGATTGTG
GTGACTTATTTTCCAAAGCTAAAATCATGTGGGCTGACACTTCTTTGAATTCAGGATTGC
CCTGGGAAAAGCCAGATCCTGTAACTGATTTTCCTGATTCTGAGGCTGGGTTTCAAAGGT
TTGTCCCAGACACATTCCAGAGAATTTTGTACCAGAATTTGGATGCACAATCCAGCTTAC
TACTGATAAATGCTGAACCTTGTTTAGGGAGAGGCCCTCCCCCCAACCTGCTGTTCTTTG
TCTTAGTTGTTGGAAGAGTTGGATTTGGTGGGAGCCATGAGCCCAGGGGACCACACTTGG
TTTCTACTGACCCCCTGTCATGATATGGGACTTGCAGTGTGCCACCTGGCCCTGCCCAGC
CTCTGCCCTTCTCATGCAGCTTTAAAACCATACTACTTGTATTTAAAGATGAACAGGATG
GGAGAAAGTGGTGTTCCCTGCCCTGTGCACCATGCATTTCCCCTGGGGCAGGGAGAGGGG
GGCCCACAGGAAGCATGGGGGCGGGGAAGGGAATGCAAGAGCAACTTTCTCCCAGGATTG
GGGAACTCTTCCCAGTGACATGGCAACAAGCTGCTGCACATGCTCCTTTGGAAACCAAGT
GTGTGAACTGAATGCCTGCTAGGCATCCACAGACCTGGGTGAAGGCTGTCTCTCCCACTC
AGCACAGGGGTGCCTGTGCTGGACCCTTCCCTCCCCAGCCTGCCCCCCATGGAGCAGGAG
ACCACCTCCCACGGTGGCTCAGACACTGGTAGGTGGGGCAGCATCCATTCCTGGGTCAGG
GTGCCTGTCTCTGGGTCTGTGGTTGGGAGGCTTTGCCCCCAGGCCACACTCTGAAGAGTC
CCTTGTGCCAGGTGCCAAGGACCTTGAGGGCTGGAAGGCATCACTCTCCTGAGCAGCTGT
ACATTGTCCGGCACGGGCCAACTGTGGCTCCCAAGGGGCCGGAACTACTGTGTGCGAGTG
CTGCGCCCACAGCCACCCGGACTCCACACAGACAGCCCCTCCCCCGTCCAAAGCCATTGA
TGGAGCTTCTCTGGAATTGTTTGCCAAAATCCCAAGGTAGAATCCAAGGGTCCAAGACCA
TTTCCATCAAGTACACATTTTCCTTTTCTGTAGGAACGTTTTTTGTTGTTTTTATAACCA
GCACCACATCATGCTTCCGAAGACTGCATTTCATCTTTCCTGGATCACTACAGTGAAGTA
TTACAGTTGTACAGTTTCCAGTCTGGCCTTGGCTTGCTCGGATAAAACTTTGTATGTATT
TTGTAAGGCATAGATTCTATATTGTAATGATGTCCTATGCAAAAAGAAAAAAATTAACTA
AAAATTGTAAATTTTATTGTTTTAACGTGTATGCATGTTTAGTGATGTTTACATTTTGAA
ATAAAATTTATGATTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGACTCAGTACTGAAAGATTTGAAGGGCCCTGATGTATCGGTCACGTTGCAACCTGT
AAGAAAAGCTTTGCAGGTCACCCACATCTTAGCTCTCCAAAGATTCCATGTATGATTGTG
GTGACTTATTTTCCAAAGCTAAAATCATGTGGGCTGACACTTCTTTGAATTCAGGATTGC
CCTGGGAAAAGCCAGATCCTGTAACTGATTTTCCTGATTCTGAGGCTGGGTTTCAAAGGT
TTGTCCCAGACACATTCCAGAGAATTTTGTACCAGAATTTGGATGCACAATCCAGCTTAC
TACTGATAAATGCTGAACCTTGTTTAGGGAGAGGCCCTCCCCCCAACCTGCTGTTCTTTG
TCTTAGTTGTTGGAAGAGTTGGATTTGGTGGGAGCCATGAGCCCAGGGGACCACACTTGG
TTTCTACTGACCCCCTGTCATGATATGGGACTTGCAGTGTGCCACCTGGCCCTGCCCAGC
CTCTGCCCTTCTCATGCAGCTTTAAAACCATACTACTTGTATTTAAAGATGAACAGGATG
GGAGAAAGTGGTGTTCCCTGCCCTGTGCACCATGCATTTCCCCTGGGGCAGGGAGAGGGG
GGCCCACAGGAAGCATGGGGGCGGGGAAGGGAATGCAAGAGCAACTTTCTCCCAGGATTG
GGGAACTCTTCCCAGTGACATGGCAACAAGCTGCTGCACATGCTCCTTTGGAAACCAAGT
GTGTGAACTGAATGCCTGCTAGGCATCCACAGACCTGGGTGAAGGCTGTCTCTCCCACTC
AGCACAGGGGTGCCTGTGCTGGACCCTTCCCTCCCCAGCCTGCCCCCCATGGAGCAGGAG
ACCACCTCCCACGGTGGCTCAGACACTGGTAGGTGGGGCAGCATCCATTCCTGGGTCAGG
GTGCCTGTCTCTGGGTCTGTGGTTGGGAGGCTTTGCCCCCAGGCCACACTCTGAAGAGTC
CCTTGTGCCAGGTGCCAAGGACCTTGAGGGCTGGAAGGCATCACTCTCCTGAGCAGCTGT
ACATTGTCCGGCACGGGCCAACTGTGGCTCCCAAGGGGCCGGAACTACTGTGTGCGAGTG
CTGCGCCCACAGCCACCCGGACTCCACACAGACAGCCCCTCCCCCGTCCAAAGCCATTGA
TGGAGCTTCTCTGGAATTGTTTGCCAAAATCCCAAGGTAGAATCCAAGGGTCCAAGACCA
TTTCCATCAAGTACACATTTTCCTTTTCTGTAGGAACGTTTTTTGTTGTTTTTATAACCA
GCACCACATCATGCTTCCGAAGACTGCATTTCATCTTTCCTGGATCACTACAGTGAAGTA
TTACAGTTGTACAGTTTCCAGTCTGGCCTTGGCTTGCTCGGATAAAACTTTGTATGTATT
TTGTAAGGCATAGATTCTATATTGTAATGATGTCCTATGCAAAAAGAAAAAAATTAACTA
AAAATTGTAAATTTTATTGTTTTAACGTGTATGCATGTTTAGTGATGTTTACATTTTGAA
ATAAAATTTATGATTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               737-855, - strand, RNAz p=0.898955

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               737-855, - strand, RNAz p=0.898955

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               553-751, + strand, RNAmicro p=0.949047

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               553-751, + strand, RNAmicro p=0.949047

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               175-855, gnl|bosTau2|chr21 (39553835-39553190)
               

               
               175-855, gnl|Hg17|chr15 (29456038-29456720)
               

               
               175-855, gnl|Mm7|chr7 (59637369-59636780)
               


               
               897-1543, gnl|bosTau2|chr21 (39553195-39552540)
               

               
               897-1543, gnl|Hg17|chr15 (29456695-29457394)
               

               
               897-1543, gnl|Mm7|chr7 (59636785-59636164)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-855, gnl|bosTau2|chr21 (39553835-39553190)
               

               
               175-855, gnl|Hg17|chr15 (29456038-29456720)
               

               
               175-855, gnl|Mm7|chr7 (59637369-59636780)
               


               
               897-1543, gnl|bosTau2|chr21 (39553195-39552540)
               

               
               897-1543, gnl|Hg17|chr15 (29456695-29457394)
               

               
               897-1543, gnl|Mm7|chr7 (59636785-59636164)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               thg (0.507164)
               

               
               fty (0.351679)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.507164)
               

               
               fty (0.351679)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	175-855, gnl\|bosTau2\|chr21 (39553835-39553190)
	175-855, gnl\|Hg17\|chr15 (29456038-29456720)
	175-855, gnl\|Mm7\|chr7 (59637369-59636780)

	897-1543, gnl\|bosTau2\|chr21 (39553195-39552540)
	897-1543, gnl\|Hg17\|chr15 (29456695-29457394)
	897-1543, gnl\|Mm7\|chr7 (59636785-59636164)

	thg (0.507164)
	fty (0.351679)
	fce (0.271592)
	cly (0.241284)
	nep (0.183925)
	gul (0.177588)
	fbs (0.175346)
	duo (0.172801)
	nje (0.16592)
	mga (0.160205)
	cag (0.151194)
	bfe (0.149858)
	fat (0.147427)
	lnt (0.142308)
	eru (0.120048)
	pgl (0.118483)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)