Ss1.1-rlnt34c_g22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGGCGTCTCCGAGGCGCGCGGCTGGCACCATGTTCCTGACCGCGCTCCTGCGCCGTA ACCGCATCCCCGGCCGGCAGTGGATCGGGAAGCACCGGCGGCCGCGGCCCGTCTCCGCTC AGGCGAAGCAGAACATGATCCGCCGCCTGGAGACCGAGGCGGAGAACCAGTACTGGCTGA GCCGGCCCTTCCTCACGGCCGAGCAGGAGCGCGGCCACGCCGCGGTGCGCAGGGCGGCCG CCTTCCAGGCCCTCAAGGCGGCGCAGGCGGCGCGCTTCCCCGCGCACCGGCGGCTGGAGG AGCAGCTCGGCCACCTGCTCGTGACCCGGAAGTGGTCGTGACGCCAGGCCGGCCGGCGGC GAGTCCCGCTGCGGCGCGGAGCCCCCGCCCGGCGGCGCCCCTGCCCCGCGGGGACGCGGA AGGGCGCCTTTGCAGTCAAACCTACTCCTAAGAGCGGCCTTTTCTTCTGAGATGCGCTGG TCAAAGCGGACGTTAAAATGAAAAGGTGTTTAAAAAGAAGAGTTGGGATACAGTTAATCA GTTCTCCAGTTGAAGATGTTCCCGTCTTTCAGCCAGCCTTCTTCTGAATGTAATAAAAAT AGTCAAAGAGTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGGCGTCTCCGAGGCGCGCGGCTGGCACCATGTTCCTGACCGCGCTCCTGCGCCGTA ACCGCATCCCCGGCCGGCAGTGGATCGGGAAGCACCGGCGGCCGCGGCCCGTCTCCGCTC AGGCGAAGCAGAACATGATCCGCCGCCTGGAGACCGAGGCGGAGAACCAGTACTGGCTGA GCCGGCCCTTCCTCACGGCCGAGCAGGAGCGCGGCCACGCCGCGGTGCGCAGGGCGGCCG CCTTCCAGGCCCTCAAGGCGGCGCAGGCGGCGCGCTTCCCCGCGCACCGGCGGCTGGAGG AGCAGCTCGGCCACCTGCTCGTGACCCGGAAGTGGTCGTGACGCCAGGCCGGCCGGCGGC GAGTCCCGCTGCGGCGCGGAGCCCCCGCCCGGCGGCGCCCCTGCCCCGCGGGGACGCGGA AGGGCGCCTTTGCAGTCAAACCTACTCCTAAGAGCGGCCTTTTCTTCTGAGATGCGCTGG TCAAAGCGGACGTTAAAATGAAAAGGTGTTTAAAAAGAAGAGTTGGGATACAGTTAATCA GTTCTCCAGTTGAAGATGTTCCCGTCTTTCAGCCAGCCTTCTTCTGAATGTAATAAAAAT AGTCAAAGAGTAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 101-220, - strand, RNAz p=0.549534 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 101-220, - strand, RNAz p=0.549534 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 22-423, gnl|bosTau2|chr12 (21147065-21146665) | |
| 22-423, gnl|canFam2|chr12 (60943475-60943147) | |
| 22-423, gnl|canFam2|chr25 (19966402-19966088) | |
| 22-423, gnl|danRer3|chr17 (31945472-31945161) | |
| 22-423, gnl|dasNov1|scaffold_52931 (5908-5575) | |
| 22-423, gnl|dasNov1|scaffold_52931 (5582-5896) | |
| 22-423, gnl|echTel1|scaffold_276328 (8485-8164) | |
| 22-423, gnl|echTel1|scaffold_276328 (8159-8473) | |
| 22-423, gnl|fr1|chrUn (47034984-47035290) | |
| 22-423, gnl|fr1|chrUn (47035290-47034984) | |
| 22-423, gnl|galGal2|chr1 (170568977-170568663) | |
| 22-423, gnl|hg17|chr13 (20649048-20649362) | |
| 22-423, gnl|Hg17|chr13 (20649045-20649373) | |
| 22-423, gnl|hg17|chr14 (34757972-34758257) | |
| 22-423, gnl|loxAfr1|scaffold_19746 (25012-24679) | |
| 22-423, gnl|loxAfr1|scaffold_19746 (24686-25000) | |
| 22-423, gnl|mm7|chr14 (52694750-52694434) | |
| 22-423, gnl|mm7|chr14 (52694430-52694744) | |
| 22-423, gnl|Mm7|chr14 (52694427-52694748) | |
| 22-423, gnl|monDom2|scaffold_15 (29073908-29074222) | |
| 22-423, gnl|oryCun1|scaffold_183323 (8908-8573) | |
| 22-423, gnl|oryCun1|scaffold_183323 (8577-8896) | |
| 22-423, gnl|panTro1|chr14 (19822279-19822593) | |
| 22-423, gnl|panTro1|chr15 (33919042-33919327) | |
| 22-423, gnl|rheMac2|chr17 (498441-498127) | |
| 22-423, gnl|rheMac2|chr7 (98173176-98173462) | |
| 22-423, gnl|rn3|chr15 (36883193-36882869) | |
| 22-423, gnl|rn3|chr15 (36882867-36883181) | |
| 22-423, gnl|tetNig1|chr17 (10612445-10612753) | |
| 22-423, gnl|xenTro1|scaffold_68 (1756158-1756471) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-423, gnl|bosTau2|chr12 (21147065-21146665) | |
| 22-423, gnl|canFam2|chr12 (60943475-60943147) | |
| 22-423, gnl|canFam2|chr25 (19966402-19966088) | |
| 22-423, gnl|danRer3|chr17 (31945472-31945161) | |
| 22-423, gnl|dasNov1|scaffold_52931 (5908-5575) | |
| 22-423, gnl|dasNov1|scaffold_52931 (5582-5896) | |
| 22-423, gnl|echTel1|scaffold_276328 (8485-8164) | |
| 22-423, gnl|echTel1|scaffold_276328 (8159-8473) | |
| 22-423, gnl|fr1|chrUn (47034984-47035290) | |
| 22-423, gnl|fr1|chrUn (47035290-47034984) | |
| 22-423, gnl|galGal2|chr1 (170568977-170568663) | |
| 22-423, gnl|hg17|chr13 (20649048-20649362) | |
| 22-423, gnl|Hg17|chr13 (20649045-20649373) | |
| 22-423, gnl|hg17|chr14 (34757972-34758257) | |
| 22-423, gnl|loxAfr1|scaffold_19746 (25012-24679) | |
| 22-423, gnl|loxAfr1|scaffold_19746 (24686-25000) | |
| 22-423, gnl|mm7|chr14 (52694750-52694434) | |
| 22-423, gnl|mm7|chr14 (52694430-52694744) | |
| 22-423, gnl|Mm7|chr14 (52694427-52694748) | |
| 22-423, gnl|monDom2|scaffold_15 (29073908-29074222) | |
| 22-423, gnl|oryCun1|scaffold_183323 (8908-8573) | |
| 22-423, gnl|oryCun1|scaffold_183323 (8577-8896) | |
| 22-423, gnl|panTro1|chr14 (19822279-19822593) | |
| 22-423, gnl|panTro1|chr15 (33919042-33919327) | |
| 22-423, gnl|rheMac2|chr17 (498441-498127) | |
| 22-423, gnl|rheMac2|chr7 (98173176-98173462) | |
| 22-423, gnl|rn3|chr15 (36883193-36882869) | |
| 22-423, gnl|rn3|chr15 (36882867-36883181) | |
| 22-423, gnl|tetNig1|chr17 (10612445-10612753) | |
| 22-423, gnl|xenTro1|scaffold_68 (1756158-1756471) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| med (0.348756) | |
| cli (0.305623) | |
| pla (0.267344) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| eep (0.122564) | |
| jca (0.11396) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.348756) | |
| cli (0.305623) | |
| pla (0.267344) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| eep (0.122564) | |
| jca (0.11396) |