Non-Coding RNA Search

Ss1.1-rlnt35c_b4.5

Sequence:


               
               AGTAGGTCGCTGAGGGACTGGGCGAACTCCCCGTCTTCCATCAGCAGAAAGTGCCGCAGC
GCCTCGAAGTGCGCCCCGAGGTGGAGTTCCACAAAAAAGTAGTCCACGGCGGCCTTGTTC
ACCAACGAGACGTGCGCAGCCAGCGGGGCGGTGACAGAGTGCTTCATGAGCACCGGCAGG
GGCAGCAGCTCGCTCAGCTGCACCGCCGTCTCGTCCGTGTCTGGCTGGACCCCGGAGTCC
TCGGGGAGGGCAAAGGCTCGAGGAAGCCCGTGGTGCAGGAGGCGGGCGACAGGAGGTTCT
GACATGGCCTCGTAGCTGTCCGGGTACTGCTCCAGGCGGTACTGCCCCGCCAGGCCTGCC
AGGTAGGCCTGCTCCATGCCCCAGCGCTGCGCCGCCTCCTCGCCGAGGCCTGGGCTGCTC
TGGGTGTCCACGCCTTCCTGTGAGCTTGGATGGCAACTCGCAGGGAGGTCCACGGTGTCC
TCACTCCTCCCTGGCTCCTCAGGGCTGCCGCCTCCCAGGACACCGGGCGCAGCTCCAGCA
GTGGGCGAGGCCTGGGGGCCGCTCTCTGCCCCTTCCACGGCTGTCTCTGCAGCTGGCTGC
GGCTCCCCCTCCTGGGCAGGGCTCTGGGCTCCTAGGCTGAGGCCTGACTGGGACCCATGG
TCAGGGGGGGTCTGGTGGGGCCAGGGCACAATGGGCTCGGCTTCCCCTGAGAGCACCCCC
AGAGTCACCTGGGACTGAGATACGTGTCCATGGACGTTCCACCGTGGCCGGGAGGGAACT
ACGTCACACACGTTCTCCCCCACCTTGATGCTGGCATCTGACACGTGTCCGTGGATGTTC
CACCGTGGCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAGGTCGCTGAGGGACTGGGCGAACTCCCCGTCTTCCATCAGCAGAAAGTGCCGCAGC
GCCTCGAAGTGCGCCCCGAGGTGGAGTTCCACAAAAAAGTAGTCCACGGCGGCCTTGTTC
ACCAACGAGACGTGCGCAGCCAGCGGGGCGGTGACAGAGTGCTTCATGAGCACCGGCAGG
GGCAGCAGCTCGCTCAGCTGCACCGCCGTCTCGTCCGTGTCTGGCTGGACCCCGGAGTCC
TCGGGGAGGGCAAAGGCTCGAGGAAGCCCGTGGTGCAGGAGGCGGGCGACAGGAGGTTCT
GACATGGCCTCGTAGCTGTCCGGGTACTGCTCCAGGCGGTACTGCCCCGCCAGGCCTGCC
AGGTAGGCCTGCTCCATGCCCCAGCGCTGCGCCGCCTCCTCGCCGAGGCCTGGGCTGCTC
TGGGTGTCCACGCCTTCCTGTGAGCTTGGATGGCAACTCGCAGGGAGGTCCACGGTGTCC
TCACTCCTCCCTGGCTCCTCAGGGCTGCCGCCTCCCAGGACACCGGGCGCAGCTCCAGCA
GTGGGCGAGGCCTGGGGGCCGCTCTCTGCCCCTTCCACGGCTGTCTCTGCAGCTGGCTGC
GGCTCCCCCTCCTGGGCAGGGCTCTGGGCTCCTAGGCTGAGGCCTGACTGGGACCCATGG
TCAGGGGGGGTCTGGTGGGGCCAGGGCACAATGGGCTCGGCTTCCCCTGAGAGCACCCCC
AGAGTCACCTGGGACTGAGATACGTGTCCATGGACGTTCCACCGTGGCCGGGAGGGAACT
ACGTCACACACGTTCTCCCCCACCTTGATGCTGGCATCTGACACGTGTCCGTGGATGTTC
CACCGTGGCCGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               579-725, + strand, RNAz p=0.971984

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               579-725, + strand, RNAz p=0.971984

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               596-751, + strand, RNAmicro p=0.999698

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               596-751, + strand, RNAmicro p=0.999698

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               133-299, gnl|bosTau2|chr5 (76038276-76038110)
               

               
               133-299, gnl|canFam2|chr10 (20013729-20013577)
               

               
               133-299, gnl|danRer3|chrNA (252674774-252674911)
               

               
               133-299, gnl|fr1|chrUn (66940910-66940769)
               

               
               133-299, gnl|galGal2|chr1 (17491568-17491417)
               

               
               133-299, gnl|hg17|chr22 (48960163-48960314)
               

               
               133-299, gnl|Hg17|chr22 (48960174-48960340)
               

               
               133-299, gnl|mm7|chr15 (89184321-89184476)
               

               
               133-299, gnl|Mm7|chr15 (89184336-89184502)
               

               
               133-299, gnl|monDom2|scaffold_119 (509497-509633)
               

               
               133-299, gnl|oryCun1|scaffold_77215 (1007-855)
               

               
               133-299, gnl|panTro1|chr23_random (16253990-16253839)
               

               
               133-299, gnl|rheMac2|chr10 (94224234-94224385)
               

               
               133-299, gnl|rn3|chr7 (127439414-127439568)
               

               
               133-299, gnl|tetNig1|chr13 (9205585-9205443)
               

               
               133-299, gnl|xenTro1|scaffold_668 (562733-562588)
               


               
               579-851, gnl|bosTau2|chr5 (76037454-76037182)
               

               
               579-851, gnl|Hg17|chr22 (48961255-48961539)
               

               
               579-851, gnl|Mm7|chr15 (89185260-89185596)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               133-299, gnl|bosTau2|chr5 (76038276-76038110)
               

               
               133-299, gnl|canFam2|chr10 (20013729-20013577)
               

               
               133-299, gnl|danRer3|chrNA (252674774-252674911)
               

               
               133-299, gnl|fr1|chrUn (66940910-66940769)
               

               
               133-299, gnl|galGal2|chr1 (17491568-17491417)
               

               
               133-299, gnl|hg17|chr22 (48960163-48960314)
               

               
               133-299, gnl|Hg17|chr22 (48960174-48960340)
               

               
               133-299, gnl|mm7|chr15 (89184321-89184476)
               

               
               133-299, gnl|Mm7|chr15 (89184336-89184502)
               

               
               133-299, gnl|monDom2|scaffold_119 (509497-509633)
               

               
               133-299, gnl|oryCun1|scaffold_77215 (1007-855)
               

               
               133-299, gnl|panTro1|chr23_random (16253990-16253839)
               

               
               133-299, gnl|rheMac2|chr10 (94224234-94224385)
               

               
               133-299, gnl|rn3|chr7 (127439414-127439568)
               

               
               133-299, gnl|tetNig1|chr13 (9205585-9205443)
               

               
               133-299, gnl|xenTro1|scaffold_668 (562733-562588)
               


               
               579-851, gnl|bosTau2|chr5 (76037454-76037182)
               

               
               579-851, gnl|Hg17|chr22 (48961255-48961539)
               

               
               579-851, gnl|Mm7|chr15 (89185260-89185596)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	133-299, gnl\|bosTau2\|chr5 (76038276-76038110)
	133-299, gnl\|canFam2\|chr10 (20013729-20013577)
	133-299, gnl\|danRer3\|chrNA (252674774-252674911)
	133-299, gnl\|fr1\|chrUn (66940910-66940769)
	133-299, gnl\|galGal2\|chr1 (17491568-17491417)
	133-299, gnl\|hg17\|chr22 (48960163-48960314)
	133-299, gnl\|Hg17\|chr22 (48960174-48960340)
	133-299, gnl\|mm7\|chr15 (89184321-89184476)
	133-299, gnl\|Mm7\|chr15 (89184336-89184502)
	133-299, gnl\|monDom2\|scaffold_119 (509497-509633)
	133-299, gnl\|oryCun1\|scaffold_77215 (1007-855)
	133-299, gnl\|panTro1\|chr23_random (16253990-16253839)
	133-299, gnl\|rheMac2\|chr10 (94224234-94224385)
	133-299, gnl\|rn3\|chr7 (127439414-127439568)
	133-299, gnl\|tetNig1\|chr13 (9205585-9205443)
	133-299, gnl\|xenTro1\|scaffold_668 (562733-562588)

	579-851, gnl\|bosTau2\|chr5 (76037454-76037182)
	579-851, gnl\|Hg17\|chr22 (48961255-48961539)
	579-851, gnl\|Mm7\|chr15 (89185260-89185596)