Non-Coding RNA Search

Ss1.1-rlnt35c_p16.5

Sequence:


               
               AGGAACTGAGCACTCGCTGGGACACCGTGTGCAAACTCTCCGTCTCCAAACAGAGCCGGC
TTGAGCAGGCCTTGAAGCAGGCAGAAGAGTTTCGGGACACGATCCACATGCTGTTGGAGT
GGCTTTCTGAAGCCGAGCAAACACTGCGCTTTCGGGGAGCACTTCCTGATGACACAGAGG
CCCTGCAGTCTCTCATCGACACCCATAAGGAATTTATGAAGAAAGTGGAAGAGAAGCGAG
TGGATGTTACCAGCGCAGTGGCCATGGGAGAGGTGATCCTGGCCGTCTGCCACCCTGACT
GCATCACTACCATCAAACACTGGATCACCATCATCCGAGCTCGCTTCGAGGAGGTCCTGA
CATGGGCCAAACAGCACCAGCAGCGTCTGGAAGCCGCCCTGTCAGAACTGGTGGCCAATG
CCGAGCTCTTGGAAGAACTTCTGGCGTGGATCCAGTGGGCCGAGACTACCCTCATTCAGC
GGGATCAGGAGCCCATCCCTCAGAACATTGACCGAGTTAAAGCCCTTATCGCCGAGCATC
AGACGTTTATGGAGGAGATGACTTGTAAACAGCCTGACGTGGACCGGGTCACCAAGACGT
ACAAAAGGAAAATCATAGAGCCAGCCCATGCCCCTTTCATGGAGAAGTCCCGTGGTGGCA
GCCGAAAGTCCTTGAGTCAGCCCACACCTCCTCCCATGCCAGTCCTTTCACAATCTGAAG
CAAAAAATCCACGGATCAACCAGCTCTCTGCCCGCTGGCAGCAGGTGTGGCTCTTGGCAC
TAGAGCGGCAGCGGAAGCTGAACGATGCCCTGGACCGGCTGGAGGAGTTGAAGGAATTTG
CCAACTTTGACTTTGATGTCTGGAGGAAAAAGTATATGCGTTGGATGAATCACAAGAAGT
CTCGGGTGATGGATTTCTTCCGGCGAATTGACAAGGACCAGGATGGGAAGATAACACGTC
AGGAGTTTATTGATGGCATCCTAGCATCCAAGTTCCCTACTACCAAGTTAGAGATGACTG
CTGTTGCTGACATTTTTGACCGTGACGGGGATGGTTACATTGATTACTATGAATTTGTGG
CTGCTCTCCATCCCAATAAGGATGCTTATCGACCAACAACCGACGCAGATAAAATTGAAG
ATGAGGTCACAAGACAAGTGGCTCAGTGCAAATGTGCAAAAAGGTTTCAGGTGGAGCAGA
TTGGAGAGAATAAATACCGGTTCTTCCTCGGCAATCAGTTTGGGGACTCCCAGCAGCTGC
GGCTGGTCCGCATCCTGCGCAGCACAGTGATGGTCCGCGTTGGTGGAGGATGGATGGCCC
TGGATGAATTTCTCGTGAAAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAACTGAGCACTCGCTGGGACACCGTGTGCAAACTCTCCGTCTCCAAACAGAGCCGGC
TTGAGCAGGCCTTGAAGCAGGCAGAAGAGTTTCGGGACACGATCCACATGCTGTTGGAGT
GGCTTTCTGAAGCCGAGCAAACACTGCGCTTTCGGGGAGCACTTCCTGATGACACAGAGG
CCCTGCAGTCTCTCATCGACACCCATAAGGAATTTATGAAGAAAGTGGAAGAGAAGCGAG
TGGATGTTACCAGCGCAGTGGCCATGGGAGAGGTGATCCTGGCCGTCTGCCACCCTGACT
GCATCACTACCATCAAACACTGGATCACCATCATCCGAGCTCGCTTCGAGGAGGTCCTGA
CATGGGCCAAACAGCACCAGCAGCGTCTGGAAGCCGCCCTGTCAGAACTGGTGGCCAATG
CCGAGCTCTTGGAAGAACTTCTGGCGTGGATCCAGTGGGCCGAGACTACCCTCATTCAGC
GGGATCAGGAGCCCATCCCTCAGAACATTGACCGAGTTAAAGCCCTTATCGCCGAGCATC
AGACGTTTATGGAGGAGATGACTTGTAAACAGCCTGACGTGGACCGGGTCACCAAGACGT
ACAAAAGGAAAATCATAGAGCCAGCCCATGCCCCTTTCATGGAGAAGTCCCGTGGTGGCA
GCCGAAAGTCCTTGAGTCAGCCCACACCTCCTCCCATGCCAGTCCTTTCACAATCTGAAG
CAAAAAATCCACGGATCAACCAGCTCTCTGCCCGCTGGCAGCAGGTGTGGCTCTTGGCAC
TAGAGCGGCAGCGGAAGCTGAACGATGCCCTGGACCGGCTGGAGGAGTTGAAGGAATTTG
CCAACTTTGACTTTGATGTCTGGAGGAAAAAGTATATGCGTTGGATGAATCACAAGAAGT
CTCGGGTGATGGATTTCTTCCGGCGAATTGACAAGGACCAGGATGGGAAGATAACACGTC
AGGAGTTTATTGATGGCATCCTAGCATCCAAGTTCCCTACTACCAAGTTAGAGATGACTG
CTGTTGCTGACATTTTTGACCGTGACGGGGATGGTTACATTGATTACTATGAATTTGTGG
CTGCTCTCCATCCCAATAAGGATGCTTATCGACCAACAACCGACGCAGATAAAATTGAAG
ATGAGGTCACAAGACAAGTGGCTCAGTGCAAATGTGCAAAAAGGTTTCAGGTGGAGCAGA
TTGGAGAGAATAAATACCGGTTCTTCCTCGGCAATCAGTTTGGGGACTCCCAGCAGCTGC
GGCTGGTCCGCATCCTGCGCAGCACAGTGATGGTCCGCGTTGGTGGAGGATGGATGGCCC
TGGATGAATTTCTCGTGAAAAATG

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               987-1147, gnl|bosTau2|chr3 (73153317-73153156)
               

               
               987-1147, gnl|canFam2|chr15 (6384467-6384253)
               

               
               987-1147, gnl|danRer3|chr19 (67733216-67733007)
               

               
               987-1147, gnl|dasNov1|scaffold_111337 (4317-4110)
               

               
               987-1147, gnl|echTel1|scaffold_300812 (55071-54862)
               

               
               987-1147, gnl|fr1|chrUn (83356457-83356285)
               

               
               987-1147, gnl|galGal2|chr23 (4859149-4859326)
               

               
               987-1147, gnl|hg17|chr1 (39596617-39596824)
               

               
               987-1147, gnl|Hg17|chr1 (39596643-39596804)
               

               
               987-1147, gnl|loxAfr1|scaffold_6514 (37812-38019)
               

               
               987-1147, gnl|mm7|chr4 (122811128-122810929)
               

               
               987-1147, gnl|Mm7|chr4 (122811099-122810939)
               

               
               987-1147, gnl|monDom2|scaffold_43 (9750913-9750705)
               

               
               987-1147, gnl|oryCun1|scaffold_199249 (42419-42214)
               

               
               987-1147, gnl|panTro1|chr1 (40477312-40477519)
               

               
               987-1147, gnl|rheMac2|chr1 (42334582-42334789)
               

               
               987-1147, gnl|rn3|chr5 (142683504-142683302)
               

               
               987-1147, gnl|tetNig1|chrUn_random (3287021-3286838)
               

               
               987-1147, gnl|xenTro1|scaffold_1043 (78291-78104)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               987-1147, gnl|bosTau2|chr3 (73153317-73153156)
               

               
               987-1147, gnl|canFam2|chr15 (6384467-6384253)
               

               
               987-1147, gnl|danRer3|chr19 (67733216-67733007)
               

               
               987-1147, gnl|dasNov1|scaffold_111337 (4317-4110)
               

               
               987-1147, gnl|echTel1|scaffold_300812 (55071-54862)
               

               
               987-1147, gnl|fr1|chrUn (83356457-83356285)
               

               
               987-1147, gnl|galGal2|chr23 (4859149-4859326)
               

               
               987-1147, gnl|hg17|chr1 (39596617-39596824)
               

               
               987-1147, gnl|Hg17|chr1 (39596643-39596804)
               

               
               987-1147, gnl|loxAfr1|scaffold_6514 (37812-38019)
               

               
               987-1147, gnl|mm7|chr4 (122811128-122810929)
               

               
               987-1147, gnl|Mm7|chr4 (122811099-122810939)
               

               
               987-1147, gnl|monDom2|scaffold_43 (9750913-9750705)
               

               
               987-1147, gnl|oryCun1|scaffold_199249 (42419-42214)
               

               
               987-1147, gnl|panTro1|chr1 (40477312-40477519)
               

               
               987-1147, gnl|rheMac2|chr1 (42334582-42334789)
               

               
               987-1147, gnl|rn3|chr5 (142683504-142683302)
               

               
               987-1147, gnl|tetNig1|chrUn_random (3287021-3286838)
               

               
               987-1147, gnl|xenTro1|scaffold_1043 (78291-78104)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	987-1147, gnl\|bosTau2\|chr3 (73153317-73153156)
	987-1147, gnl\|canFam2\|chr15 (6384467-6384253)
	987-1147, gnl\|danRer3\|chr19 (67733216-67733007)
	987-1147, gnl\|dasNov1\|scaffold_111337 (4317-4110)
	987-1147, gnl\|echTel1\|scaffold_300812 (55071-54862)
	987-1147, gnl\|fr1\|chrUn (83356457-83356285)
	987-1147, gnl\|galGal2\|chr23 (4859149-4859326)
	987-1147, gnl\|hg17\|chr1 (39596617-39596824)
	987-1147, gnl\|Hg17\|chr1 (39596643-39596804)
	987-1147, gnl\|loxAfr1\|scaffold_6514 (37812-38019)
	987-1147, gnl\|mm7\|chr4 (122811128-122810929)
	987-1147, gnl\|Mm7\|chr4 (122811099-122810939)
	987-1147, gnl\|monDom2\|scaffold_43 (9750913-9750705)
	987-1147, gnl\|oryCun1\|scaffold_199249 (42419-42214)
	987-1147, gnl\|panTro1\|chr1 (40477312-40477519)
	987-1147, gnl\|rheMac2\|chr1 (42334582-42334789)
	987-1147, gnl\|rn3\|chr5 (142683504-142683302)
	987-1147, gnl\|tetNig1\|chrUn_random (3287021-3286838)
	987-1147, gnl\|xenTro1\|scaffold_1043 (78291-78104)

	spl (0.143184)
	lnt (0.142308)
	pgl (0.118483)
	jej (0.0989218)
	eje (0.0988338)