Non-Coding RNA Search

Ss1.1-rlyg02_b9.5

Sequence:


               
               CGCCCCCCCAATTATCTGTTTTAATACTGAACCTAGAGCTTTTTTTCTTCCCTGTCCACT
CCATGTAAATGCCTTTAGCATTTCAGTTATTGTATATTTTGTTTGAGGTGACACTTCAGC
ATGCCGCTAATGTCTTTGTTAGTGACAGTGCATTTTGTAGTACTGTACAAGTGTTGTGCT
AACAGTAAGCCATTTCTTAAGTTTTTTGCCTTGATTAGGGTGCCCTAATTTGAGGGTTTA
AAAAAAAACTATATTTTTGTTAATTATAAAACTGTAAAGAGCTATAAAAGCTATTCCCAT
TTGGTTAGTCAAAAGGGTTTTATTGCTAAATGTTTGGTGTAAAGTTGAGACCCTTTTCCA
TTTTGGTGACAGATTTCTTTGGGGAAAAAAAGGCAGCTTTCTGTTTTATAAATGCCGACT
TCTGTTTATTGAATGAAGCATATCTCAGTGTTTATCTGTCAGGTTTTGAAACATTTCATA
TATGTCCAAATACTTGGCAGGATTTAAAAAAAAATAGTGAATTTGGTGTAAAGTTGCTAT
TTTATGGAAATGCCTCTAACTTTACATTTTCATTCCATCTGTAGATTTTTCTATCTTTAT
AAAATATTGGAGTTATTTTTTAAGGAAAAATAGAGAAGTAGCTTGTGAATAGCTCAAACT
AAGCTTACAAATCGCATGTAAAAAAGCAAAAAAGTTATTTGTGTCTGTTTATATTGCTTC
CTTTTTTGTAGCCTTTGTACCTGTACAGGGTGATTGTAAGGGCCAAGCAGGAGAGGCGTA
ATCCTTGTATAAAATAGGAGCCAGCGACACTCTTGTATTTATCTGTTCTCTTTTTAGTCA
GTCACTTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCCCCCAATTATCTGTTTTAATACTGAACCTAGAGCTTTTTTTCTTCCCTGTCCACT
CCATGTAAATGCCTTTAGCATTTCAGTTATTGTATATTTTGTTTGAGGTGACACTTCAGC
ATGCCGCTAATGTCTTTGTTAGTGACAGTGCATTTTGTAGTACTGTACAAGTGTTGTGCT
AACAGTAAGCCATTTCTTAAGTTTTTTGCCTTGATTAGGGTGCCCTAATTTGAGGGTTTA
AAAAAAAACTATATTTTTGTTAATTATAAAACTGTAAAGAGCTATAAAAGCTATTCCCAT
TTGGTTAGTCAAAAGGGTTTTATTGCTAAATGTTTGGTGTAAAGTTGAGACCCTTTTCCA
TTTTGGTGACAGATTTCTTTGGGGAAAAAAAGGCAGCTTTCTGTTTTATAAATGCCGACT
TCTGTTTATTGAATGAAGCATATCTCAGTGTTTATCTGTCAGGTTTTGAAACATTTCATA
TATGTCCAAATACTTGGCAGGATTTAAAAAAAAATAGTGAATTTGGTGTAAAGTTGCTAT
TTTATGGAAATGCCTCTAACTTTACATTTTCATTCCATCTGTAGATTTTTCTATCTTTAT
AAAATATTGGAGTTATTTTTTAAGGAAAAATAGAGAAGTAGCTTGTGAATAGCTCAAACT
AAGCTTACAAATCGCATGTAAAAAAGCAAAAAAGTTATTTGTGTCTGTTTATATTGCTTC
CTTTTTTGTAGCCTTTGTACCTGTACAGGGTGATTGTAAGGGCCAAGCAGGAGAGGCGTA
ATCCTTGTATAAAATAGGAGCCAGCGACACTCTTGTATTTATCTGTTCTCTTTTTAGTCA
GTCACTTCAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               41-158, - strand, RNAz p=0.507057
               

               
               199-305, - strand, RNAz p=0.696138
               

               
               423-542, + strand, RNAz p=0.559755

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-158, - strand, RNAz p=0.507057
               

               
               199-305, - strand, RNAz p=0.696138
               

               
               423-542, + strand, RNAz p=0.559755

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB002381, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB002381, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-852, gnl|bosTau2|chr28 (24096843-24095991)
               

               
               5-852, gnl|Hg17|chr10 (76461140-76461990)
               

               
               5-852, gnl|Mm7|chr14 (19329876-19330732)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-852, gnl|bosTau2|chr28 (24096843-24095991)
               

               
               5-852, gnl|Hg17|chr10 (76461140-76461990)
               

               
               5-852, gnl|Mm7|chr14 (19329876-19330732)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ret (0.3862)
               

               
               fce (0.271592)
               

               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               fce (0.271592)
               

               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

	41-158, - strand, RNAz p=0.507057
	199-305, - strand, RNAz p=0.696138
	423-542, + strand, RNAz p=0.559755

	5-852, gnl\|bosTau2\|chr28 (24096843-24095991)
	5-852, gnl\|Hg17\|chr10 (76461140-76461990)
	5-852, gnl\|Mm7\|chr14 (19329876-19330732)

	ret (0.3862)
	fce (0.271592)
	sug (0.254582)
	hea (0.204499)
	col (0.195008)
	sto (0.179824)
	eye (0.170503)
	nco (0.161734)
	fat (0.147427)
	lyg (0.133103)
	ese (0.126502)
	tra (0.123092)